Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq253 109 6e-19 seq1596 102 9e-17 >seq253 Length=360942 Score = 109 bits (120), Expect = 6e-19 Identities = 454/707 (64%), Gaps = 21/707 (3%) Strand=Plus/Plus Query 41453 GCAATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41512 ||||| || || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41513 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 41572 | ||| | |||| | || | ||||| || ||||| |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41573 ATAGATGAACCGGTGATAGCTTTA--TTATTCTTAACTGAAATAATATCAGGATACATCC 41630 || | || || || | | | | || || || | || || || |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAG--ATGTCGGGATACATGC 105027 Query 41631 TTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 41690 |||||| |||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 41691 GATTAACGCCTTCTTCAACGAACATA-ACAAGTTTAGGAAAAATAGGAGTTATCCCATCA 41749 |||||| ||||| || || | || | || | |||||| |||| | |||| | | || Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 41750 CGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 41809 ||| | || ||||| ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 41810 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTAAAGAG 41868 | || || |||||| || ||||| || || || || || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 41869 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTAGA 41928 || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCT 105325 Query 41929 TTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTTGC 41988 | |||||| |||||| | || ||| || || | | ||||||| | Sbjct 105326 ATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTC 105385 Query 41989 ATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTTCCG 42046 |||| || | |||||||||| ||| | || ||| || || | || || || Sbjct 105386 ATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGCCA 105443 Query 42047 CCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACACCG 42106 ||||| |||| ||| || || || ||||||| || | | ||| || ||| Sbjct 105444 CCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAA 105503 Query 42107 ATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTT 42153 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105504 ATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60224 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60283 |||||| | | ||| || ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 60284 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 60332 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533566174769640