Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq253 127 2e-24 seq1596 100 3e-16 seq613 87.8 2e-12 >seq253 Length=360942 Score = 127 bits (140), Expect = 2e-24 Identities = 458/707 (65%), Gaps = 21/707 (3%) Strand=Plus/Plus Query 45862 GCAATACGAGGAAGATTCAGTGTTACAACGCCAAGATTATTACGTCCATCAAGAATTTCA 45921 |||||||| || || || || | | || || | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 45922 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 45981 | ||| | |||| | || | ||||| || ||||| |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 45982 ATAGATGAGCCGGTGATAGCTTTA--TTGTTCTTAGCCGAAATGATGTCAGGATACATTC 46039 || | ||||| || | | | | || || ||| || |||||| |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAA--GATGTCGGGATACATGC 105027 Query 46040 TTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCATCTTTATAAA 46099 |||||| |||||||||| || | ||| || ||||||||||| |||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 46100 GATTAACACCCTCTTCAACGAACATA-ACAAGTTTAGGGAAAATAGGAGTTATCCCATCG 46158 |||||| || | || || | || | || | ||||||||||| | |||| | | || Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 46159 CGACCAAGACCCTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 46218 ||| | || ||||| ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 46219 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAAAG 46277 | || || |||||| || ||||| || || ||||| || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 46278 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTAGA 46337 || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCT 105325 Query 46338 TTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCGTCCTCAATATGTTTTGC 46397 | |||||| |||||| | || ||| || || | | ||||||| | Sbjct 105326 ATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTC 105385 Query 46398 ATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTTGTTCCG 46455 |||| || | |||||||||| ||| | || ||| || || | || || || Sbjct 105386 ATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGCCA 105443 Query 46456 CCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCG 46515 ||||| |||| ||| || || || ||||||| || | | ||| || ||| | Sbjct 105444 CCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAA 105503 Query 46516 ATTGATTTAGGAGTTTCAATCTGTGCATTGCCGAGCTTAAATCCGTT 46562 ||||||||||||| || || | ||||| || | ||||| || || Sbjct 105504 ATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 65110 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 65169 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 65170 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 65204 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 74104 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 74163 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 74164 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 74215 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527857497009320