Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1348 161 9e-35 seq964 114 1e-20 seq1304 111 1e-19 seq1190 98.7 9e-16 >seq1348 Length=1847788 Score = 161 bits (178), Expect = 9e-35 Identities = 685/1071 (64%), Gaps = 31/1071 (3%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || |||||||| | ||||||||||||||| || || | ||| || ||| | | Sbjct 1698186 GCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAGCCTGATTTCCAGGCATAG 1698245 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 || || || |||| || |||| | ||||| ||||| | ||| |||||||| Sbjct 1698246 AAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACATGTATATTGAACGATTGA 1698305 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTC-TTCAT 146750 |||||||||||||||||| |||||||| ||||| | || || || || | || Sbjct 1698306 CTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATGGTG-GTCTTAACGGAAAT 1698364 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACG-CTATCT---GGAATACCTTCAATGTTTT 146806 |||||| | |||||||| || | ||| ||| | || || |||| ||| || Sbjct 1698365 CTCCCAAACTGTTTTGTATAG----ATCACGTATATGTTTGGGTATTTCTTCTATGGCTT 1698420 Query 146807 GAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTC--GGGCGTGTAAAGGTTTAG 146864 | || ||||| | | || ||| | ||| ||||| | |||| | || Sbjct 1698421 GTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAA--TCAAG 1698478 Query 146865 TTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 || | | || | || |||| |||||||| || | || || |||| || ||||| Sbjct 1698479 TTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACG 1698538 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 ||| || | ||| ||| | || ||||| || ||||| ||||||| ||||| || Sbjct 1698539 TCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGC 1698598 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGAT 147044 || | || || ||||| || | | ||| ||||| || | ||| | || ||| Sbjct 1698599 GGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGACTGAT 1698658 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTA 147104 || |||||||| | ||||| ||||| | ||| || |||||||| || || Sbjct 1698659 TTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCATA 1698718 Query 147105 CTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTG 147164 || || | || ||| | |||| ||| | | || || | || || | Sbjct 1698719 TTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTC 1698778 Query 147165 CGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTT 147224 ||||||||||| || || || | || ||||| || || |||||| || |||| || Sbjct 1698779 GGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTCGAAAATCTGTTGATT 1698838 Query 147225 TAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAA 147284 || | || | ||| ||||| || || ||||| | | || | |||||| || Sbjct 1698839 TAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAA 1698898 Query 147285 ACCCTGGATACCGACGCCGATAGGTCGATG------CTTTTCGTTGCTGCGCTTCGCGCT 147338 |||||| | ||| | || ||||| ||||| || || || |||||| || Sbjct 1698899 ACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGACTTTCT-AGCTTCGGGC- 1698956 Query 147339 CGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGT 147398 | ||||| |||| || || || |||||||| || | |||||| || Sbjct 1698957 ----AACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTAATAACTTTTGT 1699012 Query 147399 TATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCA 147457 | |||| | ||| | ||||||| | ||| ||| || || | ||| || | Sbjct 1699013 AACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGAC--AAACAT--ATTAA 1699068 Query 147458 CGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTT 147517 ||| || || |||| ||| || || || |||| || | | | || | || || | Sbjct 1699069 GGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTACAATCT 1699128 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 | | ||| | ||||||||| || ||| || | |||||||| |||||||| || |||| Sbjct 1699129 CTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCGGTTGC 1699188 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 | || |||||| | | ||| || ||| ||||| || ||||| | ||||| Sbjct 1699189 AAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAA 1699239 >seq964 Length=291957 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| ||||| ||||| || | | | || |||||||||||||| || ||| | || Sbjct 215861 ACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGT 215802 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||||||||| | | || | ||||||||||||||| || || || Sbjct 215801 GCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACC 215742 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||||| ||| | | ||| | |||||| | || || || || | Sbjct 215741 TTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAA 215682 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | |||||||| || | ||||| | |||||| |||||| Sbjct 215681 TGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| ||||| ||||||||||| || |||||| |||||| Sbjct 217091 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTCC 217032 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| |||| | ||| || |||||||| || || ||||| ||||| Sbjct 217031 AGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGG 216972 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||||| || || ||||| | || | ||||| Sbjct 216971 ATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTG 216912 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||||| | ||| || ||||| Sbjct 216911 CCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || || |||||||| | | || |||||||| || || || || || || Sbjct 215633 ACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGT 215574 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| | ||||| || | | | || | ||| ||||||||||| || || || Sbjct 215573 GCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCC 215514 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||| | | ||| | |||||| | ||||| ||||| | Sbjct 215513 TTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAA 215454 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| ||||||| || || | || || |||||| Sbjct 215453 AGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | |||||| || | | || ||||||||||| || || ||| || || Sbjct 215405 ACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGT 215346 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| | |||||||||| | | |||||||| ||||||||||| || || || Sbjct 215345 GCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACC 215286 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| |||||| || | | ||| | ||||| | || || || || | Sbjct 215285 CTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAG 215226 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATT 132131 || | || || ||||| | ||| || | ||| || ||||| ||||| Sbjct 215225 GGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTTTTATT 215176 >seq1304 Length=336898 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || || ||||| |||||||||||| || ||| || |||||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||| | |||| | ||| ||||||||||| || || |||||||| || Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | || |||| ||||| ||||| | || | || ||| Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | |||||| | ||| |||||||| Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| ||||| || | | || ||||||||||| ||||| || | || Sbjct 186894 ACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGT 186835 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||||| || | | || | ||| ||||||||||| || || || Sbjct 186834 ACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCC 186775 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | ||| |||| |||||| || || | Sbjct 186774 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAG 186715 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||||||||||| Sbjct 186714 AGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600994562680