Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1348 156 4e-33 seq964 93.3 4e-14 seq1190 89.7 5e-13 >seq1348 Length=1847788 Score = 156 bits (172), Expect = 4e-33 Identities = 707/1101 (64%), Gaps = 46/1101 (4%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 ||||| ||||| || | ||| ||||| ||||| ||||||| ||| |||||||| |||||| Sbjct 1698165 ACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTT 1698224 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 || || | ||||| ||| |||||| || | ||| | || | || |||||| Sbjct 1698225 AAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCC 1698284 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || | ||| | |||||| || ||||| ||| ||| || ||||| || ||||| || Sbjct 1698285 ACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCAT-TTG 1698343 Query 136819 AATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTT--AAAGAGCTCCTTGACATTGGGC 136875 || || | || | || | |||||| | ||||| | ||| | | | | || || Sbjct 1698344 TATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGTTTGG- 1698402 Query 136876 GGAATTTCATCGATATTCTGTACAGATCCGTTGTT--------TTTGATGATT---TTCA 136924 | ||||| || || |||| || ||| || ||| || || |||| Sbjct 1698403 -GTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCA 1698461 Query 136925 TCATGAGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTA 136984 |||| || | || ||| || | ||| | || | ||| ||||| | Sbjct 1698462 TCATCCCATAAATCAAGTT--CGGTTAAATCTTTAAGC---------AAATGATGATTGA 1698510 Query 136985 CTAC-TTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCG 137043 | || |||| |||| ||||| | || | | ||| | |||| ||| |||| || Sbjct 1698511 CAACATTGA-ATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCA 1698569 Query 137044 AACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAAC 137103 || ||||| ||||| || | ||| ||||| |||| ||||| ||||| || | | | Sbjct 1698570 AAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGC 1698629 Query 137104 AATGAATTCCGTAAACCGTGTACGGCCAATTGT-TGCTTGAGCTCTTTCCAGTTCCACAG 137162 || ||||| |||| ||| ||| | | ||| | | ||| | |||| ||||||||||| Sbjct 1698630 AAAGAATTGCGTACACCATGTT-GACTGATTTTCTCCTTCAACTCTGACCAGTTCCACA- 1698687 Query 137163 ATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACT 137222 || | | ||| ||||||||| |||| | || | | || |||| | |||| Sbjct 1698688 --AGTCTGTGGGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACA 1698745 Query 137223 TTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCTGGACTAGTG 137281 | | ||||| |||||||| || | | |||| |||| |||| ||| | | | Sbjct 1698746 GCCGGGATAAGTTTCATATGTGCCAT-CTTTTTCGGCCAATTCACAACTAGCTTCCAAAG 1698804 Query 137282 CGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGT 137341 ||||||| |||||||||||| | || | | ||| || || | || || || | Sbjct 1698805 CGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCAT 1698864 Query 137342 AGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTC 137401 |||| | || || | |||| ||| |||| || |||| ||| ||||| ||||| | Sbjct 1698865 AGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGAC 1698924 Query 137402 TGTGTTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATT 137460 || ||||| || || ||| | ||| |||||||||||| ||| || ||| Sbjct 1698925 GATGACGCAAATTGGACTTTCTAGCTTCGGGCAA-CGGATAAAAGTTGATGTCGATGATT 1698983 Query 137461 CTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAG--C 137518 | |||||||| || |||| ||| | | || || | | || |||||| ||| | Sbjct 1698984 TTGTTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTC 1699043 Query 137519 TTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCG 137578 |||| ||| || | |||| |||| | |||||| ||||| || || || || || Sbjct 1699044 TTTT---CTG-GCGTGA-CAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTA 1699098 Query 137579 TTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTC 137638 | || | | | |||| |||||| || | ||| | |||||| || | Sbjct 1699099 TCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGC 1699158 Query 137639 CCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTC 137698 | | || | || ||| |||| |||| |||||| || | |||||| || || | Sbjct 1699159 CAATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTAC 1699218 Query 137699 CGGTTTCGACTTGAGTCTCAA 137719 ||||||| ||||||| |||| Sbjct 1699219 CGGTTTCAACTTGAGCTTCAA 1699239 >seq964 Length=291957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||||| || || ||| | ||||| | ||||| || ||| Sbjct 215411 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGA-GCCTT 215469 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | |||||||| || | || ||| |||||| || ||||| || || || || |||| Sbjct 215470 CTGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATC 215529 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTA 25350 | ||| | | |||| | ||||||||| | ||||| | | | |||| | |||| Sbjct 215530 AACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTG--ATTA 215587 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| || | ||||| || ||| | ||| | || || Sbjct 215588 TAATATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || || ||||| || || | ||||| | || |||||| | Sbjct 215181 AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCT 215240 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| || || | || || |||||| ||||| |||||||| || || ||| Sbjct 215241 TCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 215300 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | || |||| | ||| |||||| | ||||| | | | | | |||||| Sbjct 215301 CAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAT 215360 Query 25352 AATATTCAAAAAGAATCCAC 25371 ||||||||||||||||| || Sbjct 215361 AATATTCAAAAAGAATCTAC 215380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||||||||| || ||| | || || | || || ||| | Sbjct 215639 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTC 215698 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 215699 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 215758 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || || ||||| | ||||||| | | | | |||||| || Sbjct 215759 ACAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAA 215818 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| ||| |||| || || || Sbjct 215819 CATTCAAAAAGAATCTACCCTTCACTTGGTATT 215851 >seq1190 Length=275307 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| || || | ||||| | || ||||| | | Sbjct 186673 ATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCC 186732 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| || ||| || ||||| || || || || ||||| Sbjct 186733 GACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 186792 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || |||||| | ||||||| | | | || ||||||||| Sbjct 186793 CAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAAT 186852 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||||||||||||||| Sbjct 186853 ATTCAAAAAGAATCCAC 186869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084869416160