Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1348 140 3e-28 seq964 140 3e-28 seq1304 136 4e-27 seq1190 120 3e-22 >seq1348 Length=1847788 Score = 140 bits (154), Expect = 3e-28 Identities = 699/1099 (64%), Gaps = 31/1099 (3%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || || || ||| |||| |||||||||| || || ||| |||||||||| |||||| Sbjct 1699246 GCTATAATTGAAGCTCAAGTTGAAACCGGTACACCCTATATGTTGTACAAAGATGCTTGC 1699187 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| ||||||||| || ||| | ||||||||| |||||||| | ||| | || Sbjct 1699186 AACCGCAAAAGCAACCAGCAAAACATTGGCACCATTAAGTGCAGCAACTTATGCACAGAG 1699127 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT-GTGTTT 8411 |||||| | || || || || || | || ||||| ||| | || || | | || Sbjct 1699126 ATTGTAGAATATTCTGCCCCTGATGAGATAGCTGTTTGTAATTTGGCCTCCATTGCCCTT 1699067 Query 8412 AAACGCGTTCGTTGATCGACGCTC--AAACACTTACGACTTTGAACAATTGAAAAACGCC 8469 || | ||| || |||| ||| || | || || || |||||||||| | Sbjct 1699066 AA-----TATGTTTGTC-ACGCCAGAAAAGACCTTTGATTTCAAAAAATTGAAAAATGTT 1699013 Query 8470 GTGCAAGTGACGGTACGCA--ATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGG 8527 |||| | ||| | || | | ||||| || |||| |||||||| ||| Sbjct 1699012 ACAAAAGTTAT--TACCAAGAATCTCAACAAAATCATCGACATCAACTTTTATCCGTTGC 1698955 Query 8528 AAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGG 8587 ||||| | || || |||| || | || |||| | || || || ||| | | Sbjct 1698954 CCGAAGCTAGAAAGTCCAATTTGCGTCATCGTCCTATTGGTATAGGTGTTCAGGGTTTTG 1698895 Query 8588 CCGACGCGTTTGCCATGTT---GCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCA 8644 |||| | |||| || || ||| |||||| || || || | || || | | Sbjct 1698894 CCGATAC-TTTG--ATTTTAATGCGTTACCCCTATGAGAGTGAAAAGGCATTTTTGTTAA 1698838 Query 8645 ACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCC 8704 | | | || ||||| | ||||| ||||| || ||||| || ||| || | ||| Sbjct 1698837 ATCAACAGATTTTCGAAACTATTTATTATGGCGCTTTGGAAGCTAGTTGTGAATTGGCCG 1698778 Query 8705 GAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAAT 8764 | || ||||| || ||| | || | ||| | || | || || ||| | |||| Sbjct 1698777 AAAAAGATGGCACATATGAAACTTATCCCGGCTGTCCAGTAAGTAAGGGTATACTACAAT 1698718 Query 8765 ACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAA 8824 | || ||||||||| || ||||| |||||||| ||| || ||||| |||| Sbjct 1698717 ATGATATGTGGAATAAAACACCCACAGACTTGTGGAACTGGTCAGAGTTGAAGGAGAAAA 1698658 Query 8825 TTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTG 8884 | |||| ||| | |||||||| || | | || |||||||| || |||| | Sbjct 1698657 TCAGTCAACATGGTGTACGCAATTCTTTGCTATTAGCCCCAATGCCCACAGCTTCGACCG 1698598 Query 8885 CTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGAC 8944 | ||||| | || ||||| ||||||||||| |||| |||| || | ||| |||| Sbjct 1698597 CACAAATTCTAGGCAACAATGAATCCTTTGAACCGTACACCTCTAATATTTACACTAGAC 1698538 Query 8945 GAGTGTTGGCCGGCGATTTTTTAATGCTG--AATCGTCATTTGATGCGCGACTTGATCGA 9002 | || ||| | || || || |||| || |||| ||||||| | || || | ||| Sbjct 1698537 GTGTTTTGTCGGGAGA--ATTCAATGTTGTCAATCATCATTTGCTTAAAGATTTAACCGA 1698480 Query 9003 AGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCGTGGAAGCCAA---CGGCAGCGT 9059 | | | | || || ||||| || || | |||| |||| | | Sbjct 1698479 ACTTGATTTATGGGATGATGAAATGAAAAATAAAATTAT---TTCCAATCGCGGCTCCAT 1698423 Query 9060 TCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGA-AA 9118 || ||| || | | || |||| || || || || ||||| |||||||| | Sbjct 1698422 ACAAGCCATAGAAGAAATACCCAAACATATACGTGATCTATACAAAACAGTTTGGGAGAT 1698363 Query 9119 TGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTC 9178 | | ||| || || |||||||| || | |||||||| || ||||| |||| Sbjct 1698362 TTCCGTTAAG-ACCACCATACAAATGGCTGCCGACCGTGGCGCTTTCATAGATCAAAGTC 1698304 Query 9179 AATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATT 9238 |||| || || | || |||| |||| ||||| || || ||| |||| | Sbjct 1698303 AATCGTTCAATATACATGTGGCCGAGCCAAATTACGGCAAATTGACCTCCATACATTTCT 1698244 Query 9239 TAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTG 9298 | |||||| || ||||| || |||||||| |||||| | |||||||| ||||| Sbjct 1698243 ATGCCTGGAAATCAGGCTTAAAGACCGGCATGTATTATTTGAGAACAAAACCAGCCGCCA 1698184 Query 9299 AACCTATCAAATTTACAGT 9317 | |||| ||||||| || Sbjct 1698183 ATGCTATTCAATTTACCGT 1698165 >seq964 Length=291957 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | ||| || || ||||| ||||||||||| || ||| | ||| | Sbjct 215854 CGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCA 215795 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 215794 TCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 215735 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| ||||| ||| || || | || || || | ||| || || | ||||| Sbjct 215734 TCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATT 215675 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| |||||||||||||||||||| Sbjct 215674 GTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| | || || ||||| |||||||| ||||||||||| | | Sbjct 217109 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 217050 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || || ||||| || || || |||||||| |||||||| || || Sbjct 217049 AA-GGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 216991 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || ||||| || || || | || ||||| | ||| || Sbjct 216990 AATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGAC 216931 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 216930 TTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| |||||||| || || ||| | ||| | ||| || | || Sbjct 215387 GTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCAATTG 215328 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| | ||| || ||||| || || || || || || ||||||||||| Sbjct 215327 TTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGAATTTT 215268 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || || || | ||| || || || || ||||| || || || Sbjct 215267 AGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGT 215208 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 |||||| || ||||| ||||||||||| || ||||| Sbjct 215207 TAAAGTCTTCACGAAGATTTGCATTTT-TTATTGTT 215173 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || ||||| ||||| || || || || | ||| | || | ||| || | |||||||| Sbjct 215608 GTAGATTCTTTTTGTATATTATAATCAGACAATG-TGCGCCCGTCTTCCAATTGTTTGCC 215550 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 |||||||||||||| || ||||| || || || |||||||| ||||||||||| ||| Sbjct 215549 AGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTT 215490 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | || || || | || || || | ||| |||||||| || || || || Sbjct 215489 AACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGT 215430 Query 134696 TTTAACGAAAATTTGCAT 134713 ||||| || |||||||| Sbjct 215429 CTTAACAAAGATTTGCAT 215412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || |||||||| || ||||| || || || ||||| || || || || || || || Sbjct 216001 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTAACA 215942 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 || | |||||||| | ||| || || | ||||| ||||| ||||||||||||||| Sbjct 215941 TTCTCAATAGTGTCGGAAGGTTCAACTTCCAAGGTAATAGTTTTGCCGGTTAAAGTTTTA 215882 Query 134700 ACGAAAATTTGCAT 134713 |||||||||||||| Sbjct 215881 ACGAAAATTTGCAT 215868 >seq1304 Length=336898 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 |||| |||||||||||||| |||||||||||| | |||| || || || | ||| Sbjct 274197 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGT 274256 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || |||||||| || ||||| || || || |||||||| ||||| ||||| Sbjct 274257 TTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTG 274316 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | |||||||| | || || || | |||||||| ||||| ||| Sbjct 274317 GCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTACCAGTT 274376 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| Sbjct 274377 AAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| | |||||||| |||||||| ||||| || | || | Sbjct 186890 AGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGG 186831 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || || ||||||||||| || ||||| || || || |||||| Sbjct 186830 CCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCT 186771 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | |||||||||| || || || ||||| Sbjct 186770 TTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTG 186711 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| ||||| |||| ||||| || ||||| |||||| Sbjct 186710 ATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387578156760