Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1348 572 2e-158 seq869 304 2e-77 seq1394 91.5 2e-13 >seq1348 Length=1847788 Score = 572 bits (634), Expect = 2e-158 Identities = 1510/2274 (66%), Gaps = 52/2274 (2%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | ||||| ||||| | || || |||||||| | | ||| ||||| ||| Sbjct 1698159 TTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCG 1698218 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 || || | ||| |||| | |||||||| || || | |||| ||| |||| Sbjct 1698219 GTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGC 1698278 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 ||||| | ||| ||||| | ||||||||||||||| |||||||| || | || || ||| Sbjct 1698279 TCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCC 1698338 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAATC-------TGT 68595 |||| ||| | |||| | ||| ||||||| || | || | ||| ||| Sbjct 1698339 ATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGT 1698398 Query 68596 TTG---ATATCATCTGGAAGGCTCGTATTTTGAATGGATCCACCATCGGATATAATTATA 68652 ||| || || ||| | ||| ||| ||||| || | || ||| |||||| || Sbjct 1698399 TTGGGTATTTCTTCT--ATGGC-------TTGTATGGAGCCGCGATTGGAAATAATTTTA 1698449 Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 || || || ||||||| ||| || | || |||||| || |||| | ||| |||| Sbjct 1698450 TTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTG 1698509 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || | | ||||| || || || || | | ||||||||||||| ||| || ||||| Sbjct 1698510 ACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCA 1698569 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | |||||||| || || |||||||| || || || || || ||||| || || | | Sbjct 1698570 AAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGC 1698629 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 ||| ||| | | ||||||| ||||||| || || | | | ||| | ||| | Sbjct 1698630 AAAGAATTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAG 1698689 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| |||||| | ||| |||||||| || || |||||| | | || Sbjct 1698690 TCTGTGGGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCG 1698749 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 ||| |||||||| | || || | ||| || | ||||||||| || || || || || Sbjct 1698750 GGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCA 1698809 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 |||||||| ||||||||||||| | ||| | ||| | | ||| || | || Sbjct 1698810 TAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGG 1698869 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | | ||| || | ||| || || |||||||| || ||||| ||||| | ||| Sbjct 1698870 TAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGA 1698929 Query 69133 CTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 | | | ||| |||||| |||||| || | |||||| | || || || || ||||| || Sbjct 1698930 CGC-AAATTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTT 1698988 Query 69192 AAGAT--TTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC-C 69248 |||| || | | || ||||| || | || | ||| |||||||| ||| Sbjct 1698989 GAGATTCTTGGTAATA--ACTTTTGTAACATTTTTCAATTTTTTGAAATCAAA-GGTCTT 1699045 Query 69249 ATCT---ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 ||| | ||||||||||| || || | || || | ||||||||| |||| ||||| Sbjct 1699046 TTCTGGCGTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATC 1699105 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 || | ||||| || |||||||| |||| || || || || || || || | || Sbjct 1699106 AGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTT 1699165 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 |||||| || || || ||| || || || ||||| | ||| | || ||||| ||||| Sbjct 1699166 TTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTC 1699225 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AGCATTTATTACGGT-CTTGTAA 69483 || |||| ||| || |||| ||||| || ||| ||| | | ||||| | | Sbjct 1699226 AACTTGAGCTTCAATTATAGCAAACCAAA-GAGCCTGAGC---TTTGACGGTGCGATTGG 1699281 Query 69484 CGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 | ||| ||||||||||| | ||||| | |||||| || || ||||||||||| | Sbjct 1699282 CTTTTCCTTCTTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCT 1699341 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 || || ||||||| | ||||||||| | ||||| || ||| || | || |||| Sbjct 1699342 GCAGACCGGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTT 1699401 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||||| | ||||| ||||| ||||| ||| || |||||||||| ||||| ||||| Sbjct 1699402 TCATAAACAAGTCGGGTATCCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCC 1699460 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || |||||||| || | ||| | ||| || | |||||| |||||||| || || | | Sbjct 1699461 TTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAA 1699520 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | | || || ||||| || |||||||| | || | ||| || Sbjct 1699521 TAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTG 1699580 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||| | || || ||||| || | | |||||| || | || ||||| || ||| || Sbjct 1699581 TTAAACACCCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAA 1699640 Query 69841 CTTCCTCTTGCGCGAATAT-TACT-AATAGATAGACCTATTCCTCCTGCCATTTTAGAGA 69898 | || |||| || ||| | | | || || || || || ||| ||| || | Sbjct 1699641 GTGCC-CTTG-GCCCTTATGCAGTGTACGTTTATGCCAATACCACCCGCCGATTTGGATA 1699698 Query 69899 TTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTA 69957 | | ||||| ||| || || | | |||||||| || ||| | | ||| || | Sbjct 1699699 TCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCA 1699758 Query 69958 AGAAGAAAACAGCTAGACATTTGATGATGTA-TAGTTCCCGCATTAAATAATGTAGGAGA 70016 | ||| ||||| |||| || | | || | || | || || |||||||| || Sbjct 1699759 ATAAG-AAACACGACGACAACTG-CGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGA 1699816 Query 70017 TGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC 70076 || || || || | ||||| | || ||| || ||||||||||| || || ||||| Sbjct 1699817 CGCATGGGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATC 1699876 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136 ||| || ||||| || || | ||| ||||||||||| |||| || || | || Sbjct 1699877 GTCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTT 1699936 Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196 | ||| ||||| | || || ||| | ||||| ||||| || || || |||||||| Sbjct 1699937 ACCATTCATTTTTAGCAAATAAGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCC 1699996 Query 70197 AAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC 70256 |||||| | || |||||||| ||||| | || || ||| |||| || Sbjct 1699997 AAAGTCACGATCATAAATAATTGACGAATTCAAACGTTCTGCATTTTTCTGCACTACAT- 1700055 Query 70257 CATAACAGTA-GGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGA 70315 ||| ||| || || | || ||| || || | | ||||||| | | Sbjct 1700056 TGTAATGGTATTCGGAAATCAATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGAT 1700115 Query 70316 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGG 70375 | | ||| || || || |||| |||||| ||||| ||||| ||||| || | | Sbjct 1700116 ACAGATCACTTATAACCTCTGAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAG 1700175 Query 70376 CTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTT 70435 | || | ||||| | || ||||| || ||| | |||||| | |||||||| | | Sbjct 1700176 CAATGCGAGCTGCCAATATGGCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCT 1700235 Query 70436 CCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTT 70495 | || || || | || | |||| || ||||| || || || || | ||| || | Sbjct 1700236 CTGCCGCCAAATTGTCCAGTTCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCT 1700295 Query 70496 TCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAA 70555 ||| | || | ||||| | || || |||||| |||||||||| ||| | Sbjct 1700296 TCAGTGTAATGGCCACTGGATCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTA 1700355 Query 70556 TACGAGATGTAATTTTATCAAACATAACATTCTCCTTATTTCCACTTCGTTTAA 70609 | || ||||| |||||||| || || | ||||| |||| |||||||| Sbjct 1700356 TGCGTGATGTTATTTTATCGAAATGTACCTCTTCCTTGCGTCCATCTCGTTTAA 1700409 >seq869 Length=1271022 Score = 304 bits (336), Expect = 2e-77 Identities = 496/711 (70%), Gaps = 9/711 (1%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| | ||| || ||||||||||| ||| ||| | || ||||||||| ||||| | Sbjct 484145 CAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAA 484086 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || | ||| || || || || || | ||| || | || || || || || || Sbjct 484085 ATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAAT 484026 Query 39565 --CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | || | || ||| ||| || | || | ||||||||||||||||| || Sbjct 484025 TTCAATAATTCTCTCTCG--ACTGGGACGTTGTACCAAATGTTTAAACATTAATACAGCA 483968 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||||| |||||||| | || || || || || ||||| || |||||| Sbjct 483967 AAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGC 483908 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || |||||||| || || |||||||| |||| ||||||| ||| |||||| || || Sbjct 483907 ATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCC 483848 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA----TCCA 39798 ||||| || ||||| |||| || | || || || ||| | ||| | | |||| Sbjct 483847 TCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGC-TGATTTCGAAGAAATCCA 483789 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||||||| || || ||| ||| ||||| ||||| |||||||||||||| Sbjct 483788 AGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAG 483729 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 ||||| | |||| ||| |||| ||| |||| |||| | |||||||||||| || Sbjct 483728 ATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGA 483669 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 || | ||||| || || || ||||| || || ||||| | ||| || |||| |||||| Sbjct 483668 GTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTAC 483609 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||| | | || | ||| | | ||||||||| || || ||||| |||||| || || Sbjct 483608 TTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAA 483549 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | |||||| ||| |||| |||| | || | | | | |||||| | | Sbjct 483548 AGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTT 483489 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 |||||| || | |||||||||||| | |||||||| || || || ||||| Sbjct 483488 ATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGCCTT 483438 >seq1394 Length=309634 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34699 AATTCCTAATTCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATA 34758 ||| |||||||| || ||||| |||| ||| | ||| |||||||| ||||| || | ||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 34759 AATGTGTGCATTATCCGATATCCAAAATTTTGTATGAAGAACACCGCC 34806 ||| ||| || || || ||||| ||||||||||| | |||||| || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894091565320