Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq87 127 2e-24 seq253 105 7e-18 >seq87 Length=489008 Score = 127 bits (140), Expect = 2e-24 Identities = 77/80 (96%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 103765 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 103824 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 311562 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 311503 Query 103825 ACC-ACTGAGCTAAGGGGCC 103843 ||| |||||||||||||||| Sbjct 311502 ACCAACTGAGCTAAGGGGCC 311483 >seq253 Length=360942 Score = 105 bits (116), Expect = 7e-18 Identities = 409/629 (65%), Gaps = 18/629 (3%) Strand=Plus/Plus Query 79937 ATATCGGGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTT 79996 || ||||||||||| || || || || ||||| |||| |||||||||||||| || Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 79997 GGGTCTTCACTGCGAAGATTTAAACCTTCTTCAACGAACATA-ACCAATTTAGGAAAAAT 80055 || || || | |||| | |||| || || | || | || |||||||| |||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAAC 105130 Query 80056 TGGAGTAATTCCATGACGACCTAATCCCCGAATACGATTTTTAAGAATAGCTTGTTGAAT 80115 | ||| | | || |||||| || ||||| ||||| ||||| | |||||| || Sbjct 105131 GGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGAT 105190 Query 80116 TA---GTTTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTG 80172 | || ||||| | ||||| || | |||||| || ||| ||||| || ||||| Sbjct 105191 CAAGCGTGCTTCTTGC---GATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTG 105247 Query 80173 GCCGTTAGAACTGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATAC 80232 || || | | || || || ||||| |||||| ||| || |||||| | || Sbjct 105248 ACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-AC 105306 Query 80233 A-TCTTTTTCTGTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAG 80291 | |||||||| |||| | ||| || || || ||| ||| | | | Sbjct 105307 ATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCG 105366 Query 80292 CGTCTTCGATATGTTTGTTGAAAGTTGCT-TCTACATAAGGAGCTAGTACTTGGTCGA-- 80348 | || | |||||| || | || || | | ||||||||||| || | || || | Sbjct 105367 CTGTTTTTAGATGTTT-TTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATG 105425 Query 80349 CATTAGCAAATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCA 80408 | | | | || || |||||||| ||| |||||||||||| ||||||| || Sbjct 105426 CGGTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTG 105483 Query 80409 TTACGGCAGTTGCTACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAA 80468 | || || || || |||||| || | | || ||||| |||||||| | ||||| Sbjct 105484 TCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAA 105543 Query 80469 ACCCATTTTGAAGCATTCCGGCTAAATCTACTAAGCA-ACAGTTAGTAAACGGAAGCGAT 80527 ||||||| | ||| || | | ||| | | |||| ||||||| | || | || Sbjct 105544 ACCCATTAGTTAACATGCCTTCAAGATC-AATCAGCATACAGTTAAACATGGGGAAAAAT 105602 Query 80528 GGTGAATAATCCATGTCATGAAAATGGAT 80556 || | |||||| | || ||| |||| || Sbjct 105603 GGCGCATAATCGAGATCGTGATAATGAAT 105631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505777969797320