Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq253 113 5e-20 seq1596 95.1 1e-14 >seq253 Length=360942 Score = 113 bits (124), Expect = 5e-20 Identities = 455/707 (64%), Gaps = 21/707 (3%) Strand=Plus/Plus Query 41352 GCAATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41411 ||||| || || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41412 TTACCAGTCGAATCTTTCCATACACTCAAGAAACTACGACAACCCATTGGAGAAACAGGA 41471 | ||| | |||| | |||| ||||| || || || |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41472 ATAGATGAACCGGTGATAGCTTTA--TTGTTCTTAGCCGAAATGATGTCAGGATACATTC 41529 || | || || || | | | | || || ||| || |||||| |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAA--GATGTCGGGATACATGC 105027 Query 41530 TTTTACTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 41589 ||| || |||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 41590 GATTAACACCTTCTTCAACGAACATA-ACAAGTTTAGGGAAAATAGGAGTTATCCCGTCA 41648 |||||| |||| || || | || | || | ||||||||||| | |||| | | | Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 41649 CGACCAAGGCCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 41708 ||| | || ||||| ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 41709 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAGAG 41767 | || || |||||| || ||||| || || ||||| || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 41768 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTAGA 41827 || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCT 105325 Query 41828 TTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTTGC 41887 | ||||| |||||| | || ||| || || | | ||||||| | Sbjct 105326 ATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTC 105385 Query 41888 ATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTTCCA 41945 |||| || | |||||||||| ||| | || ||| || || | || || ||| Sbjct 105386 ATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGCCA 105443 Query 41946 CCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCG 42005 || || |||| ||| || || || ||||||| || | | ||| || ||| | Sbjct 105444 CCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAA 105503 Query 42006 ATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTT 42052 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105504 ATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60711 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60770 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 60771 GCATATCCGGATACACGGATGGTCAGCTGCGGATA 60805 ||||| || ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534186961476760