Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq1596 107 2e-18 seq253 102 9e-17 seq613 87.8 2e-12 >seq1596 Length=248270 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 61407 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61466 |||||| | | |||||| ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 61467 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 61515 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq253 Length=360942 Score = 102 bits (112), Expect = 9e-17 Identities = 355/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 42182 ATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 42241 || || |||||||| | |||||| |||||||||| || | ||| || ||||||||||| Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 42242 GGATCGTCTTTGTAAAGATTAACACCTTCTTCAACGAACATA-ACAAGCTTAGGAAAAAT 42300 ||||| | | | |||||| |||| || || | || | || | ||||| |||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAAC 105130 Query 42301 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 42360 | |||| | | || ||| | || ||||| ||||| ||||| | || || || Sbjct 105131 GGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGAT 105190 Query 42361 CATTCGTTCAGTCCAGTCA-GTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTTTGTC 42419 || ||| | || | | || ||| |||||| || ||||| || || ||||| | Sbjct 105191 CAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGAC 105249 Query 42420 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA- 42478 | || | || || || || ||||| |||||| | |||||| |||||||| ||| Sbjct 105250 CATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACAT 105308 Query 42479 TCTTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCGGCGATTTGCCATTTTTCTGCA 42538 |||||||| |||| | ||||| |||||| | || ||| || || Sbjct 105309 TCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCT 105368 Query 42539 TCCTTAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTC 42598 || | ||||||| ||||| || | |||||||||| ||| | || ||| || | Sbjct 105369 GTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGC 105426 Query 42599 G--CAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAA 42656 | | || || || || || || ||| || || || ||||||| || | | Sbjct 105427 GGTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCA 105486 Query 42657 TTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATC 42716 ||| || ||| ||||||||||||| || || | |||||||| | ||||| | Sbjct 105487 CTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACC 105546 Query 42717 CATT 42720 |||| Sbjct 105547 CATT 105550 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 69362 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 69421 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 69422 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69473 || | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534462155584040