Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027356.1 Length=108065 Score E Sequences producing significant alignments: (Bits) Value seq253 114 9e-21 >seq253 Length=360942 Score = 114 bits (126), Expect = 9e-21 Identities = 424/656 (65%), Gaps = 14/656 (2%) Strand=Plus/Minus Query 44313 TAACTGT-TGCTTAGTAGACCTTGGTGGCATGCTGAAGAATGGTACTAAAATTGGTAATG 44371 ||||||| |||| | | || |||| |||||| | | ||||| |||||| ||||||| Sbjct 105587 TAACTGTATGCTGATT-GATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATG 105529 Query 44372 CAAATATTGAAACTCCTAAATCCATAACTACTGCGTGTGCAATCACTGCTCAGATTATTG 44431 | | || || |||||||||| || | ||||| ||| | || || || ||||| | Sbjct 105528 CCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCG 105469 Query 44432 CCCAAGTATCTGGTGCTCAGTATGGTGGCACTTCTATTGATCGTATCGATGAGGTTCTAG 44491 | |||||| || | | ||||||||||| | || | || || ||||| | || | Sbjct 105468 CTCAAGTAGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTG 105409 Query 44492 CACCATATGTCAGAAAGTCTTACAATAAACACCTGGGTC--GTGGTCTACGTTGGCTCAA 44549 | || |||||| | || | ||||| || | | || | |||| || Sbjct 105408 CTCCTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAA--TTGGGGCAT 105351 Query 44550 GGATGAAAGAAAAGCTGCTGTGTACGCTACTGAGCTTACTGAAAAAGAGTGTTATGATGC 44609 || || |||| ||| || || | | || |||||||| ||||| ||||| Sbjct 105350 TGAAGATGCGAAAG--GCTATG----CTGATAGCCAAACCGAAAAAGAATGTTACGATGC 105297 Query 44610 ATTCCAAGCCCTAGAGTATGAAACTAATTCATTATTTAACTCTAACGGACAGACTCCTTT 44669 |||||| |||| || || ||| || || | || | | || || || || || || Sbjct 105296 CTTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTT 105237 Query 44670 TGTTACGCTTGGCTTTGGGCTAGG-ACAGGGGTGGGAGGAAAGGATGATTCAGAAAGCCA 44728 || || |||| ||||| |||| ||| | | || | | |||| || || ||| Sbjct 105236 CGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCAC-GCTTGATCCAACAATCCA 105178 Query 44729 TCCTCCAAAACCGTATTAAAGGTTTAGGTGCTGCTGAGTCAACCCCTATCTTCCCTAAAC 44788 | || |||||||||| || |||||| | ||| | | ||||||||| Sbjct 105177 TTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAAT 105118 Query 44789 TAGTATTCTCAGTTAAAGAAGGATTAAATAAAAATCCAGGCGATCCTAACTACGATATAA 44848 |||| || | ||||| |||| | ||| | | || ||||||||||| ||||| | Sbjct 105117 TAGTGTTTGCTATTAAAAAAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCA 105058 Query 44849 AACAGCTAGCACTTGAGTGTTCTGCTACCCGTATGTACCCGGACTATTTAAGTTACGAGA 44908 ||||| ||||| | |||||| | | || ||||| || ||| |||| || || | Sbjct 105057 AACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACA 104998 Query 44909 AAGTTGTAGCTGTTACTGGTGATTTTAAAGCCCCTATGGGTTGTCGTAGTTTTTTA 44964 ||||||| | ||| || || |||||| | || ||||| || || || || ||| Sbjct 104997 AAGTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTA 104942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345675983107018