Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq869 214 1e-50 seq1303 212 5e-50 seq767 170 2e-37 >seq869 Length=1271022 Score = 214 bits (236), Expect = 1e-50 Identities = 426/626 (68%), Gaps = 14/626 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| | || || || || || ||| || || |||||||||||| | || || || Sbjct 483540 GTTCTTGCTTTCTTCGCCGCTTCCGATGGCATTGTCAATGAAAATCTTGTCGAACGTTTC 483599 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | |||||||| ||| | |||| ||||| ||||| ||||| |||||||||||||| ||| Sbjct 483600 TCTCAAGAAGTACAAGTTACAGAGGCACGCTGTTTCTATGGCTTTCAAATTGCCATGGAA 483659 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||| | || || |||||||| ||| |||| || |||| || || || ||| | || Sbjct 483660 AATGTACACTCTGAAATGTATAGTATTCTAATTGATAGTTATATTAAGGAT---CGTGAA 483716 Query 44030 AAGCATCGAT----TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085 ||| | ||| | |||||||| || ||||| | || || |||| | ||| || || Sbjct 483717 CAGCGT-GATTATCTCTTTAATGCTATTGAAACTATGCCAGCTGTTAAGCGTAAGGCCGA 483775 Query 44086 CTGGGCCCTTAAATGGATAAATTC-AAAT--GATTCTTTTGGAGAACGACTTGTCGCGTT 44142 ||||| | ||||| ||| |||| | |||||| ||||| || | || || Sbjct 483776 TTGGGCAATGGCTTGGATTTCTTCGAAATCAGCAAATTTTGGTGAACGTATTATTGCTTT 483835 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||| | ||| || || ||||||||| || ||||| |||| |||||| ||||||| Sbjct 483836 TGCTGCTGTAGAGGGTATTTTCTTTAGTGGCAGTTTTGCTTCCATCTTTTGGCTAAAGAA 483895 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 ||| ||| | |||||||| | || || || |||||||| ||| |||||||| || || Sbjct 483896 ACGTGGTCTTATGCCTGGTCTTACATTCTCCAATGAGTTGATATCACGTGATGAGGGTTT 483955 Query 44263 ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAA 44322 |||||| ||||||||| || | || | || | | | | | || | | Sbjct 483956 ACATTGTGATTTTGCTGTATTAATGTTTAAACATTTGGTACAACGT---CCCAGTCGAGA 484012 Query 44323 GACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 || ||||| || ||| | || || || || || ||||| ||||| | ||| || Sbjct 484013 GAGAATTATTGAAATTATCACTGAAGCGGTGAAAATTGAACAGGAATTCCTTACAGATGC 484072 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 || || || ||||| ||||| |||||| || ||| ||||||| |||| | Sbjct 484073 TTTGCCCGTCAATTTGATAGGCATGAATTGTAAATTAATGTCGGAATATATAGAATTTGT 484132 Query 44443 TGCAGATCGTTTACTTTTGGAACTGG 44468 || |||||||| || ||||| ||| Sbjct 484133 GGCCGATCGTTTGCTGGTGGAATTGG 484158 >seq1303 Length=344040 Score = 212 bits (234), Expect = 5e-50 Identities = 489/734 (67%), Gaps = 2/734 (0%) Strand=Plus/Minus Query 40691 GTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATG 40750 |||||| ||| |||| |||||| | | |||||| | | || |||||||| || || Sbjct 96436 GTTTCCATTGTTAACCACAAAACGAGTATTTTGGCGTGCGGTGGCCGAAGAACTATTGTG 96377 Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGA-AAGAGGAGTGCACATTTGGA 40809 |||| | | ||||| || |||| || | ||| ||| |||| | | ||||||||| Sbjct 96376 GTTTGTACATGGTTGCACCGATGCCAAAATATTGCAAGAGAAGAACA-TACACATTTGGG 96318 Query 40810 ATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTG 40869 ||| | ||| | | || ||| || |||| || || | || || |||| Sbjct 96317 ATGGTAATAGTGATCGTAAATTCTTGGATAAATTAGGTTTTACCGAACGCGAAGAGGGTG 96258 Query 40870 ATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT 40929 || | |||||||| ||||| || || | ||| |||||||| || |||||| |||| Sbjct 96257 ATTTGGGTCCTGTGTATGGTTTCCAATGGCGTCATTTTGGTGCCAAATATCGCACTTGCC 96198 Query 40930 ACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAAT 40989 || |||||| ||||| | || ||||||| | || || || |||| || Sbjct 96197 ACGATGATTACTCCAATGAGGGTGTGGATCAGCTGAAGGAGGTCATCAATACAATACGTA 96138 Query 40990 CCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGA 41049 | ||||| || |||||||| || ||| || ||||| || || ||| | Sbjct 96137 CTAATCCCAATGATCGACGTATTATTATGTCAGCCTGGAATCCTCTCGATATACCACAAA 96078 Query 41050 TGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCAT 41109 |||| ||||| || ||||||| || || || || || ||||||||||| |||| Sbjct 96077 TGGCTTTGCCGCCCTGTCATTGTTTGGCACAATTCTATGTGGCAAATGGTGAACTATCAT 96018 Query 41110 GTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTT 41169 | || ||||| ||| | | ||||||||| || || || || ||||| ||||| | Sbjct 96017 GCCAGTTGTACCAACGCAGCGCTGACATGGGTCTGGGTGTACCATTTAATATAGCTTCAT 95958 Query 41170 ATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTC 41229 ||||| | || || ||||||||||| || ||||| ||| ||||| || || ||| ||| Sbjct 95957 ATGCTTTACTAACATATATGATTGCTCATATTACCGGTTTGAAACCAGGAGATTTTATTC 95898 Query 41230 ACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGA 41289 | || || ||| ||| |||| | ||||| || || || || | |||||| ||| Sbjct 95897 ATACCACTGGTGATACTCATGTTTATAAGAATCATATTGAACCTTTGAAGGAACAATTGA 95838 Query 41290 CACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATG 41349 ||| ||||| | || || || | | ||||| ||||| | ||| | | || || | Sbjct 95837 AACGTAAACCACGTCCTTTCCCTAAATTGCTTATAAAACGTGAAGTTAAGGATATAGAGG 95778 Query 41350 ATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGG 41409 |||| | || ||||||| || || || || || || || ||||| | |||| Sbjct 95777 ATTTCAAATTTGAAGATTTTGAAATTGTCGGCTATAAACCTTATCCAAAAATAGAAATGG 95718 Query 41410 ACATGTCTGTATGA 41423 | ||| |||| ||| Sbjct 95717 AAATGGCTGTTTGA 95704 >seq767 Length=1660825 Score = 170 bits (188), Expect = 2e-37 Identities = 258/363 (71%), Gaps = 18/363 (5%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG- 19606 |||||||||||| || | |||||| | || || || ||||| ||| | ||||||| | Sbjct 520059 TTTGCACATTATCATCTTTGATGAAATCGATGCCATTTGTAAACAACGTGGTTCTGTGGC 520000 Query 19607 ---TAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 ||| ||| || || || ||||| || |||||| | || | ||| | || ||||| Sbjct 519999 CGGTAATAGTGGTGTCCACGATACTGTGGTAAATCAATTGTTGGCCAAAATCGATGGTGT 519940 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | | ||| | ||||| |||||||||||||| ||||||||| | | || | || || Sbjct 519939 TGAACAATTAAATAACATTTTAGTTATTGGTATGACTAATCGTCGTGATATGATTGATGA 519880 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 ||||||||| || |||||||| |||||| || | || ||||||| |||||| ||||| Sbjct 519879 CGCCTTATTGCGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACA 519820 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAA--CCATGCGACAAAATAACCTTTTA 19839 || |||||| |||||||||| || | ||| ||| |||||| || || | | Sbjct 519819 GGGTCGTGTGCAAATTTTAAATATTC--ACACCAAGCGCATGCGTGAATTCAA----TAA 519766 Query 19840 AAT----GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGC 19895 ||| |||||||||| |||| ||||| || ||| ||||||| ||| || || Sbjct 519765 AATCGCCCCCGATGTAGATTGCAAAGAGATTGCTGCTCTTACTAAAAACTTTAGTGGAGC 519706 Query 19896 AGA 19898 || Sbjct 519705 TGA 519703 Score = 98.7 bits (108), Expect = 8e-16 Identities = 202/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||| || || || |||||| | |||||||||| || || || Sbjct 520429 ATTGGCGGTTTGGATAAGGAATTCAATGCCATCTTTAGAAGAGCATTTGCTTCTCGAGTC 520370 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | |||| | | |||| ||||| || || || || || |||| | ||| Sbjct 520369 TTTCCACCAGAGTTGGTAGAACAGTTGGGCTGCAAGCACGTAAAGGGTATTTTATTATAT 520310 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACA 19419 || ||||| ||| ||| ||||| || || || | || || | || ||| | | Sbjct 520309 GGTCCACCCGGTACTGGTAAAACTTTGATGGCTCGTCAAATTGGCAATATGTTAAATGCC 520250 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | ||| || ||||| |||||||| | || || |||||||||| ||| |||| Sbjct 520249 AGAGAGCCT---AAGATTGTTAATGGTCCACAGATTTTGGATAAATATGTGGGTGAATCA 520193 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACA-AAAACGTTTAGGG 19536 |||| || | || ||||||||||| || ||||| || ||| | |||| | | |||| Sbjct 520192 GAAGCCAACATTCGTCGTTTGTTTGCCGAAGCTGAGGAGGAAGAGAAAAGGGTAAGGG 520135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447702236565