Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1348 379 2e-100 seq964 125 6e-24 seq1190 105 6e-18 seq1304 104 2e-17 >seq1348 Length=1847788 Score = 379 bits (420), Expect = 2e-100 Identities = 1043/1577 (66%), Gaps = 47/1577 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || ||||| |||||||| ||||||| ||| || || || | ||||||||||||||| Sbjct 1698159 TTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCG 1698218 Query 130466 GT-TTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGG 130524 || ||| || | |||| | | ||| || ||| | || | | |||||| || Sbjct 1698219 GTCTTTAAGCCTGATTTCCAGGC-ATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGG 1698277 Query 130525 TTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGC 130584 | ||||| ||| |||| |||||| |||||| || |||||||| | ||| ||||| Sbjct 1698278 CTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGC 1698337 Query 130585 CATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTG 130644 ||| | | |||| ||| ||||||||| | || ||||||||||| | || || Sbjct 1698338 CATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATG 1698397 Query 130645 TTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCAT 130704 ||||||||| | || | ||| | | ||| |||| ||||||| || ||| Sbjct 1698398 TTTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCAT 1698457 Query 130705 ACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTG 130764 | ||| | || |||| | | |||||| | |||||||| ||| | | | Sbjct 1698458 TTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATT 1698517 Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 || || || | || || |||||| |||||| || ||| |||||||||||||||| Sbjct 1698518 GAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTC 1698577 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG---AGA 130881 |||||||| | |||||||| || | || |||||||| || ||||||| ||| Sbjct 1698578 ATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCAT---TGGGGCTAATAGCAAAGA 1698634 Query 130882 ATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGT 130941 ||| || | ||| || ||||||| |||||| || ||| | ||| | || Sbjct 1698635 ATTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGT 1698694 Query 130942 AGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTG----G 130997 ||| | || |||||||||||| |||||||||| || ||||| | |||| | | Sbjct 1698695 GGGTGTT---TTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGG 1698751 Query 130998 ATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTC 131057 || | | ||| || | || || |||| || |||||||||||||| | Sbjct 1698752 AT----AAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGC 1698807 Query 131058 CGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAG 131117 | |||||||| |||||| ||| |||| |||||| || | | ||||| || | Sbjct 1698808 CATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGG 1698867 Query 131118 GAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTAT 131177 | | ||||||||| |||| || || | |||||| | || | || | || | || Sbjct 1698868 GGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGAT 1698927 Query 131178 GTTTTAAATTACATTTACGCGAACATTCGGTG---GGATAAAGGTTAATGTCAATTATTT 131234 | ||||| | || | | ||||| ||||||| ||| ||||| || |||| Sbjct 1698928 GACGCAAATTGGACTTTCTAGC---TTCGGGCAACGGATAAAAGTTGATGTCGATGATTT 1698984 Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGC 131294 |||| | ||| | || || ||| || |||||||||| | ||||||||| || Sbjct 1698985 TGTTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCT 1699044 Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTT 131354 |||| | | ||||| ||| | || || |||| ||||||||| || | | Sbjct 1699045 ---TTTCTGGCGTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCT 1699101 Query 131355 CGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCA 131414 | ||| | |||| | ||||| || | ||| || || |||| ||| |||||||| | Sbjct 1699102 CATCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAA 1699161 Query 131415 AATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCC 131473 ||||| || |||||||| || | || | || ||||||| ||| ||||| || || Sbjct 1699162 TGTTTTGCTGGTTGCTTTT-GCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCG 1699220 Query 131474 GTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCA--GACAATTGATA 131529 ||||| ||||||| |||||| || | | |||||| | |||| ||| | | | Sbjct 1699221 GTTTCAACTTGAGCTTCAATTATAGCAAACCAAAGAGCCT--GAGCTTTGACGGT-GCGA 1699277 Query 131530 TTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAAC 131587 || | || | | |||||| || || ||||| ||| || | | || |||| Sbjct 1699278 TTGGCTTTTCCTTC-TTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAAC 1699336 Query 131588 GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 ||| || | |||||||| | ||||||||||| ||||| | || || | ||| Sbjct 1699337 ATCCTG--CAGACCGGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCC 1699394 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || || ||||||||||| || || | ||| | || || || |||||||| ||| | | | Sbjct 1699395 ACACGTTTCATAAACAAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATGC 1699454 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 ||||| | || || |||| || |||| ||||| || ||||| || | |||||| || Sbjct 1699455 TCTTCCTTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGC 1699514 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACC 131824 |||||||| | || | || || ||| || ||| || |||| ||||| || | Sbjct 1699515 TCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCT 1699574 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 | ||||| | || | | ||| || ||| ||| || | | | || || |||| | | Sbjct 1699575 ACATTGTTAAACACCCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCA 1699634 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACC-TCCGCCGTATTT 131943 ||| | |||| ||||| || || ||| ||||| | |||||||| |||||| |||| Sbjct 1699635 ATGGAAGTGCCCTTGGCCCTTATGCAGTGTACGTTTATGCCAATACCACCCGCCG-ATTT 1699693 Query 131944 AGAGATTAGTGCGCATT 131960 || || | || |||| Sbjct 1699694 GGATATCATGGCACATT 1699710 >seq964 Length=291957 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || ||||||||||| || ||||| |||||||| ||||| || || Sbjct 215640 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAG 215581 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || ||||| ||||||| | ||||| || || |||| | ||| |||||||| || | Sbjct 215580 ACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 215521 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || || ||| | |||| | ||| || | | |||| Sbjct 215520 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAA 215461 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| | ||| || | |||||| |||| || || |||||||||||||| Sbjct 215460 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||||||||| || | ||||| ||||||||||| || || ||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||||||||| ||| |||| | |||||||||||| || || Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||| || ||| | |||||| ||| || | | |||||| Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| ||||| | ||||| || || |||||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || | ||||| || | ||||| |||||||||||||| || ||| Sbjct 215412 TGCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGG 215353 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| ||||||| | ||||||||||| |||| ||||| |||||||| || | Sbjct 215352 ACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGG 215293 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| || || || | |||| | || || | | ||| | Sbjct 215292 GAATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGA 215233 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || | ||| ||||| ||||||||||| Sbjct 215232 CCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCAT 215184 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||| ||||| | ||||| || || || || ||||| || | | |||| | Sbjct 216869 CGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCA 216810 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||||||||| | || | ||| ||||| || || || | ||| || ||| Sbjct 216809 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTA 216750 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | |||| | || || | | ||||||||| | ||| || Sbjct 216749 TCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATG 216690 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| ||||||||| ||||| |||||| Sbjct 216689 GTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCATA 216654 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| || | || | |||||||| | || || || ||||| || |||||||| Sbjct 217110 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 217051 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | ||||| || |||||||||||| | || | ||| || ||||| || || Sbjct 217050 CAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 216991 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| ||| || || | | | || | || || | | ||| || Sbjct 216990 AATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGAC 216931 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | ||| || | |||||| |||| ||||| || |||||||||||| Sbjct 216930 TTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCATA 216882 >seq1190 Length=275307 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||||||||| || || || || ||||||||||||||||| || | | || | Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || ||| |||| | ||| |||||||| || || | || ||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | |||| | |||||| | | || || || ||||| || Sbjct 186767 TCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATG 186708 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 | || ||||| || ||||| ||||| || ||||| || Sbjct 186707 GTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATTGC 186670 >seq1304 Length=336898 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 |||||||||||| || || || ||||| || ||||||||| || | |||| | ||||| Sbjct 274190 TACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTC 274249 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| ||| | || | ||| |||||||| || || | ||| ||||| || Sbjct 274250 CAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTG 274309 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| || | |||| | ||||| | | |||||||| | || || | || Sbjct 274310 GATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTT 274369 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | |||||| || ||||| ||||| Sbjct 274370 ACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925528564856