Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq253 116 4e-21 seq1596 100 3e-16 >seq253 Length=360942 Score = 116 bits (128), Expect = 4e-21 Identities = 458/708 (65%), Gaps = 23/708 (3%) Strand=Plus/Plus Query 41451 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41510 || ||||| || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41511 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTGCGGCAACCCATTGGAGAAACAGGA 41570 | ||| | |||| | || | ||||| |||||||| |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41571 ATAGATGAGCCGGTGATAGCTTTA--TTGTTCTTAGCTGAAATAATATCAGGATACATCC 41628 || | ||||| || | | | | || || ||| | || || || |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAG--ATGTCGGGATACATGC 105027 Query 41629 TTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTGTAAA 41688 |||||| || ||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 41689 GATTAACGCCTTCTTCGACGAACATA-ACAAGCTTAGGAAAAATAGGAGTTATCCCGTCA 41747 |||||| ||||| || | | || | || | ||||| |||| | |||| | | | Sbjct 105088 GATTAAGGCCTT-TTTTAATAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 41748 CGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 41807 ||| | || ||||| ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 41808 TCA-GTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAAAGAG 41866 | || ||| |||||| || ||||| || || ||||| || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 41867 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTTAG 41925 || || ||||| |||||| | |||||| |||||||| ||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACATTCTTTTTCGGTTTGGC 105324 Query 41926 ATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTTG 41985 | |||||| |||||| | || ||| || || | | ||||||| Sbjct 105325 TATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTT 105384 Query 41986 CATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATC--TACATTAGCAAAAGTCGTTCC 42043 ||||| || | |||||||||| ||| | || ||| | | | | | || || || Sbjct 105385 CATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATGCGGTTG--ATGGTGGTGCC 105442 Query 42044 GCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACTCC 42103 || || |||| ||| || || || ||||||| || | | ||| || ||| Sbjct 105443 ACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGA 105502 Query 42104 AATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTT 42151 |||||||||||||| || || | |||||||| | ||||| || || Sbjct 105503 AATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60779 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60838 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 60839 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 60873 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535652530094600