Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq583 87.8 2e-12 seq1368 82.4 1e-10 >seq583 Length=2816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||||||||||| ||||||||| ||||| ||| || ||| ||||| | || Sbjct 311 GTGCATACCCTCATCTCTGGAAATAAGCTCATTACTGAATGTTAAACCAGGCATCAAGCC 252 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787 |||||||||||||| |||| || |||||| || |||||||| |||||| ||| Sbjct 251 ACGCTTCTTCAACCAGAAAATGGCAGCGAATGAACCACTGAAGAAGACACCCTCGACA 194 >seq1368 Length=130540 Score = 82.4 bits (90), Expect = 1e-10 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 9307 TGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTG 9366 |||| || ||| || || ||||| || || ||||||||| || |||||| | | |||| Sbjct 18318 TGTTCGCCTGCAATGGTATACTCTTTAATCACGAATCACCGCGAAGAGGTGAAAATTTTG 18377 Query 9367 TGACCATGAAGATTACC-GAGG-GTATCAAACAA--ATCATGAAGGGTGAAAAGGAGTTC 9422 | || || |||||| || ||| |||| | ||| | || | || ||| | | Sbjct 18378 TAACACGTAAAATTACCCGATCAGTAGCAAAAATCTATC-TCAA---TCAATTGGAATAC 18433 Query 9423 ATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAA 9482 ||||||||||||| || | | | | ||||||||||| || | ||| ||||| || Sbjct 18434 TTTGAATTGGGTAATTTAGATTCAAAACGTGATTGGGGTCATGCTATGGATTATGTAGAG 18493 Query 9483 GCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAG 9542 || |||||| | ||| | ||||| ||| || || || ||||| | || || || || Sbjct 18494 GCCATGTGGATGATGTTGCAACAGGAGAAACCCTCAGATTATGTCATTGCCACCGGAGAA 18553 Query 9543 ACCCAT 9548 || ||| Sbjct 18554 ACGCAT 18559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018552264800