Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1348 123 3e-23 seq1531 98.7 1e-15 seq287 87.8 2e-12 >seq1348 Length=1847788 Score = 123 bits (136), Expect = 3e-23 Identities = 371/570 (65%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 ||||| || ||| || | ||| || ||||| | ||||| || ||||| | || ||| Sbjct 1698879 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTG 1698938 Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 ||||| | ||| || |||||||| || | ||||| | | || ||||| ||| Sbjct 1698939 GACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTG 1698998 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT-- 118692 || | ||| ||||| | | | | |||| | ||||||| |||| ||| Sbjct 1698999 GTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAG------GTCTTTTCTGGC 1699052 Query 118693 -TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 ||||| || || |||||| || || |||| |||||| |||| ||||||| || Sbjct 1699053 GTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCA 1699112 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | || |||| ||| || ||||| ||||| | |||||||||||| | ||| | || Sbjct 1699113 GAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTG- 1699171 Query 118812 TTTGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 ||| |||| ||| || ||||| ||||| | ||| || || || || || || ||| Sbjct 1699172 GTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTG 1699231 Query 118871 GGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930 | | | ||||| ||| | | | |||| || ||| |||||| || || Sbjct 1699232 AGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTC 1699291 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 || || ||||| || || | |||| ||||| |||||| | || || || || Sbjct 1699292 TTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGG 1699351 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | ||| || | || ||||| | |||| || || || || ||||| || | Sbjct 1699352 ACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAA 1699411 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 ||| || ||||| || || |||| ||||| Sbjct 1699412 GTCGGGTATCCACAGAGCATAGAAAAGATC 1699441 >seq1531 Length=926236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | ||| || || |||||||| | ||||| |||||||| ||||| Sbjct 338977 ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATTAATATT 338918 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || || |||| |||| | |||||| || ||||| || || | | | | || |||| Sbjct 338917 ATTCGAGCCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGTAATGAA-ACCTCAC 338859 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCAC 179210 ||||||||||||| ||| | || ||||| Sbjct 338858 CGTGATGGTAAGCGGACATTTCAGCCAC 338831 >seq287 Length=1085586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||| || || || |||||||| ||||| | |||||||| ||||| ||| || | | Sbjct 86949 ACCAACAGCATCGATTTCATCAATGAACAATATACATGGAGCATTTTTACGTGCCATGGC 86890 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||| ||||| |||||||| || ||| |||||||||||||| |||| || | || | Sbjct 86889 AAACATATCACGCACTCTAGAGGGACCAACACCCACAAACATTTCCAGGAATTCGGATCC 86830 Query 14356 GGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||| ||| | || || || || |||| |||||| || Sbjct 86829 GGAGACAGT-AATAAAAGGCACATTAGCTTCACCTGC 86794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421957756280