Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1348 132 6e-26 seq253 104 3e-17 seq1368 84.2 3e-11 >seq1348 Length=1847788 Score = 132 bits (146), Expect = 6e-26 Identities = 574/897 (64%), Gaps = 23/897 (3%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| |||| ||||| ||||| || || | || ||||| | || || || | ||| Sbjct 1699441 GATCTTTTCTATGCTCTGTGGATACCCGACTTGTTTATGAAACGTGTGGAAGAAAATGGT 1699382 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAG 104818 | ||||| || | |||||| |||| || ||||| |||| |||||||||| Sbjct 1699381 GACTGGTCCCTAATGTGTCCACACAAATGTCCCGGTCTGCAGGATGTTTGGGGTGAGGAG 1699322 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCT 104878 || |||| | || || ||||| || ||||||| || | | || || |||| Sbjct 1699321 TTCGAAGAATTGTATACCAAGTATGAAAAAGAAGGAAAAGCCAATCGCACCGTCAAAGCT 1699262 Query 104879 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 | | | ||| ||||| | | ||||| || || |||||||| || ||| | Sbjct 1699261 CAGGCTCTTTGGTTTGCTATAATTGAAGCTCAAGTTGAAACCGGTACACCCTATATGTTG 1699202 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 104998 |||||||| || || |||| || || || || | || | || || ||| | | Sbjct 1699201 TACAAAGATGCTTGCAACCGCAAAAGCAACCAGCAAAACATTGGCACCATTAAGTGCAGC 1699142 Query 104999 AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 105058 || | || ||||| || | |||| | | | | ||||||| ||||| ||||| | Sbjct 1699141 AACTTATGCACAGAGATTGTAGAATATTCTGCCCCTGATGAGATAGCTGTTTGTAATTTG 1699082 Query 105059 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 105118 || || || || || | || ||| ||||| |||||| ||||||| ||||| Sbjct 1699081 GCCTCCATTGCCCTTAATATGTTTGTCACGCCAGA---AAAGACCTTTGATTTCAAAAAA 1699025 Query 105119 CTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTT 105178 | | | ||||| ||| | | ||||| || || |||| | | || || | || ||| Sbjct 1699024 TTGAAAAATGTTACAAAAGTTATTACCAAGAATCTCAACAAAATCATCGACATCAACTTT 1698965 Query 105179 TACCCCGTTGA--GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTG 105236 || || |||| || ||| | || || ||| || | || ||||| |||||| | |||| Sbjct 1698964 TATCC-GTTGCCCGAA-GCTAGAAAGTCCAATTTGCGTCATCGTCCTATTGGTATAGGTG 1698907 Query 105237 TTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC-- 105294 |||||||| | || ||| || ||| | || || | | ||| || | || Sbjct 1698906 TTCAGGGTTTTGCCGATACTTTGATTTTAATGCGTTACCCCTATGAGAGTGAAAAGGCAT 1698847 Query 105295 --GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGT 105352 ||||||| | || || || || || ||| | | |||| | || || ||| Sbjct 1698846 TTTTGTTAAATCAA----CAGATTTTCGAAACTATTTATTATGGCGCTTTGGAAGCTAGT 1698791 Query 105353 TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAA 105412 | || ||||| || ||||| |||||||||| | | || | ||||| | || Sbjct 1698790 TGTGAATTGGCCGAAAAAGATGGCACATATGAAACTTATCCCGGCTGTCCAG-TAAGTAA 1698732 Query 105413 GGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC---CAAGCTTCACTACGACTGGGA 105468 ||| | || |||| |||||||| |||| | || || ||| | ||||| Sbjct 1698731 GGGTATACTACAATATGATATGT-GGAATAAAACACCCACAGACTT--GTGGAACTGGTC 1698675 Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528 || | ||||| |||| | | ||| | || || | | || | || ||||| Sbjct 1698674 AGAGTTGAAGGAGAAAATCAGTCAACATGGTGTACGCAATTCTTTGCTATTAGCCCCAAT 1698615 Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||| ||||| || ||||||||||| | || || ||||||| ||||||||| ||||| Sbjct 1698614 GCCCACAGCTTCGACCGCACAAATTCTAGGCAACAATGAATCCTTTGAACCGTACAC 1698558 >seq253 Length=360942 Score = 104 bits (114), Expect = 3e-17 Identities = 253/374 (68%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| || || ||||||||||| | | || ||||| | ||| | || || ||||| Sbjct 67712 ACGGTCGAAACGACCTGGACGTAATAATGCAGGGTCAAGAACATCTGCACGGTTAGTCGC 67653 Query 9583 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || ||||| | ||||||| ||||| |||||||||||||| || ||| | ||| Sbjct 67652 TGCAATGACGATAATACCT---TCATTGCCTTCAAAACCATCCATTTCAACCAACATTTG 67596 Query 9640 GTTAATAGTTTGTTCCCGTTCATCAT--TCGCTGGCATACCACCAGCACTGCGTTGCTTT 9697 ||| | ||||| || |||||||| | ||| || || ||| || | ||||| Sbjct 67595 GTTCAATGTTTGCTCGCGTTCATCGTGACCGC-CGCCTA-AACCTGCGCCACGTTGACGA 67538 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGACTT 9755 || || |||||||||||||| || |||| ||||| | | || |||| | || || Sbjct 67537 CCGACCGCATCAATCTCATCGATAAAGATAATGCAAGGCGCTGCTTTTTTC--GCTTGTT 67480 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 | || | ||| || ||||| || || ||||| |||||||| || || |||| | Sbjct 67479 CGAACATATCACGAACACGAGATGCACCAACACCGACAAACATTTCAACGAAGTCAGAAC 67420 Query 9816 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 | ||| || | | || || || || | |||||| || || ||| || || | || Sbjct 67419 CTGAA-ATAGTAAAAAATGGTACTTTTGCTTCACCAGCGATCGCTTTAGCAAGCAATGTT 67361 Query 9875 TTACCCGTACCTGG 9888 ||||| ||||| || Sbjct 67360 TTACCTGTACCCGG 67347 >seq1368 Length=130540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 170/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 7383 TGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTG 7442 |||| || ||| || || ||||| || || ||||||||| || |||||| | | |||| Sbjct 18318 TGTTCGCCTGCAATGGTATACTCTTTAATCACGAATCACCGCGAAGAGGTGAAAATTTTG 18377 Query 7443 TCACAAAGAAGATTACC-GAGG-GTATCAAACAA--ATCATGAAGGGTGAAAAGGAGTTC 7498 | ||| || |||||| || ||| |||| | ||| | || | || ||| | | Sbjct 18378 TAACACGTAAAATTACCCGATCAGTAGCAAAAATCTATC-TCAA---TCAATTGGAATAC 18433 Query 7499 ATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAA 7558 ||||||||||||| || | | | ||||||||||| || | ||| ||||| || Sbjct 18434 TTTGAATTGGGTAATTTAGATTCAAAACGTGATTGGGGTCATGCTATGGATTATGTAGAG 18493 Query 7559 GCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAG 7618 || |||||| | ||| | ||||| ||| || || || ||||| | || || || || Sbjct 18494 GCCATGTGGATGATGTTGCAACAGGAGAAACCCTCAGATTATGTCATTGCCACCGGAGAA 18553 Query 7619 ACCCATA 7625 || |||| Sbjct 18554 ACGCATA 18560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248310928120