Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1190 154 2e-32 seq964 154 2e-32 seq1304 145 9e-30 >seq1190 Length=275307 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || || || ||||| || ||||||||||| ||| | Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | || || || ||||||||||| || |||||||| ||||| || Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 186791 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||| ||||| || ||| | || |||| ||||| || | || || || Sbjct 186792 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAA 186851 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||||||| | || | || ||||| ||||| ||||| Sbjct 186852 TATTCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCGTGGTGG 186899 >seq964 Length=291957 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || || |||||||| || | Sbjct 215183 AATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCTTC 215242 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | |||||||||||||| || |||||||| ||||| ||||| || Sbjct 215243 GGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCA 215302 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || |||||||||||||| ||||| ||| | || || | || || | | || ||||| Sbjct 215303 ACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAA 215362 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| ||||| || | || | ||| | || ||||| Sbjct 215363 TATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | |||||||| || || ||| | || || || | Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 216943 GATACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 217002 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || ||||| ||||| || |||| ||||||| | | ||||| || Sbjct 217003 CAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAAC 217062 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || ||| | || | |||||||| || || Sbjct 217063 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGG 217109 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || ||||| || || ||| | || |||||| | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| ||||| || ||||| || ||||| || Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||| | || || | || || | | || |||||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | ||| | || || ||| | || ||||| Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 >seq1304 Length=336898 Score = 145 bits (160), Expect = 9e-30 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||| ||||| || | || || ||||| ||||| | || |||||| Sbjct 274404 TATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGC 274345 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | || | ||||| |||| | ||||| ||||| || ||||| || || || || |||| Sbjct 274344 CTTCCGACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAG 274285 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 | || || ||| | || || |||||||| ||| | || |||| ||| ||| | | |||| Sbjct 274284 ATCAACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACT 274225 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | || | |||||||| ||||| Sbjct 274224 ACAACATCCAAAAGGAATCCACTTTACATTTGGTACTCCGTCTTCGTGGTGG 274173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298188228560