Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq253 107 2e-18 seq1596 100 3e-16 seq613 87.8 2e-12 >seq253 Length=360942 Score = 107 bits (118), Expect = 2e-18 Identities = 354/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 151737 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTC 151796 || || |||||||| | |||||| || ||||||| || | ||| || ||||||||||| Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 151797 GGATCGTCTTTGTAAAGATTAACGCCTTCTTCGACGAACATA-ACAAGCTTAGGGAAAAT 151855 ||||| | | | |||||| ||||| || | | || | || | |||||||||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTT-TTTTAATAGCAAACACTAATTTAGGGAAAAC 105130 Query 151856 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 151915 | |||| | | || ||| | || ||||| ||||| ||||| | || || || Sbjct 105131 GGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGAT 105190 Query 151916 CATTCGTTCAGTCCAGTCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGTGTTTGCC 151974 || ||| | || | | || || |||||| || ||||| || || ||||| | Sbjct 105191 CAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGAC 105249 Query 151975 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 152034 | || | || || || || ||||| |||||| | |||||| |||||||| | Sbjct 105250 CATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATT 105309 Query 152035 CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCAT 152094 ||||||| |||| | |||||| |||||| | || ||| || || Sbjct 105310 CTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTG 105369 Query 152095 CCTCAATATGTTTTGCATATGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG 152154 | | ||||||| |||| || | |||||||||| ||| | || ||| || || Sbjct 105370 TTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCG 105427 Query 152155 --CAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 152212 | || || || ||||| |||| ||| || || || ||||||| || | | Sbjct 105428 GTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCAC 105487 Query 152213 TGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCC 152272 ||| || ||| | |||||||||||||| || || | |||||||| | ||||| || Sbjct 105488 TGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCC 105547 Query 152273 GTT 152275 || Sbjct 105548 ATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3819 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 3878 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 3879 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 3913 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 12783 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 12842 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 12843 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 12894 || | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535754927901960