Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1190 176 4e-39 seq1304 172 5e-38 seq964 165 7e-36 seq1266 89.7 4e-13 >seq1190 Length=275307 Score = 176 bits (194), Expect = 4e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 |||| |||||||| ||||| ||||| || || || ||| | || |||||||| || || | Sbjct 186668 ACGCAATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGC 186727 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 |||||||| | ||||| | |||||| || ||||| ||||||||||| || ||||| | Sbjct 186728 CGTCCGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAG 186787 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 ||||||| ||||| || | ||| || |||||||||||||| | || | || |||| Sbjct 186788 ATCAACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATT 186847 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| |||||||| || || || || || ||||| ||||| | || ||||| Sbjct 186848 ACAATATTCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCGTGGTGG 186899 >seq1304 Length=336898 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | || || ||| | ||||| | ||||| || || ||| Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| |||||||||||||| || || || |||||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| || ||| | ||||| |||||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || ||||||||||| | ||| | || ||||| || Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGTCTTCGTGGTGGTAT 274170 >seq964 Length=291957 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| ||||| | || ||| | ||||| || || || Sbjct 215411 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTC 215470 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| |||||||||||||||||||| || ||||| ||||| Sbjct 215471 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 215530 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | || |||||||||||||||||| | || | || ||||| || Sbjct 215531 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 215590 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || || |||||||| || |||||||| |||||||| Sbjct 215591 TATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCAT 215641 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | || |||||| | || || ||||| || ||||| || Sbjct 215184 ATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCG 215243 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || || ||||||||||| || || || || || || |||||| Sbjct 215244 GATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCAA 215303 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | ||||| ||||||||||||||| | || | |||||||| || Sbjct 215304 CAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAT 215363 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || |||||| | |||||||| |||||||| Sbjct 215364 ATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGGCAT 215413 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| ||||||| || | || ||| | ||||| ||||| ||| Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || ||||| || ||||| || || || || ||| Sbjct 216715 GATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 216774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| |||||||||||||| | ||| |||| ||||||||| Sbjct 216775 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAAC 216834 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||||| || |||||| | || ||||| || Sbjct 216835 ATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGTCTCCGTGGTGGTAT 216884 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| | || || || | ||||| | || || ||||| || Sbjct 215639 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTC 215698 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| ||||| |||||||||||||| || || || ||||| Sbjct 215699 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 215758 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || ||||| |||||||| | || | |||||||| || Sbjct 215759 ACAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAA 215818 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || ||| | || ||||| ||||||||||| ||||| || Sbjct 215819 CATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 215869 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||||||||| | || ||| | ||||| ||||| ||| Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 216943 GATACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 217002 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| |||||| ||||||| || ||| | || || |||||| Sbjct 217003 CAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAAC 217062 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| ||| | |||||||| | ||| | || || ||| Sbjct 217063 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGGC 217110 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||| || |||||||| | || | |||||||||||||| |||||||| || Sbjct 216562 GCCGGCAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAACATCCAAAAGGAATCC 216621 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | ||||| || ||||||||||| ||||| || Sbjct 216622 ACCCTCCATTTAGTATTGCGTTTGCGTGGTGGTAT 216656 >seq1266 Length=2164085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGC 135530 || ||||| | || |||| |||||| | | ||| || |||||||| || ||| | | Sbjct 369038 TTATGGAATTCTGCGCAACTGCAGCTGGTTAATGAG--GGTAAAATGCATGGCTTTTTAC 369095 Query 135531 GCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAAC 135590 ||||||||||||| || || || || |||||| | | ||| || | |||| | || Sbjct 369096 GCATGTATTGGGCTAAGAAAATCTTAGAATGGACAGAATCTCCCGAGCAGGCTTTGGAAT 369155 Query 135591 ACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAG 135650 | || || || ||||| || | || ||||||||||| || ||| | ||||| || || | Sbjct 369156 ATGCCATTTTACTTAATAATAAGTATAGTTTAGATGGTCGAGATCCCAATGGTTATGTGG 369215 Query 135651 GT 135652 || Sbjct 369216 GT 369217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 ||||||| |||||||||||| | ||| | || ||||| || ||| || || | | Sbjct 369277 TAGGTTGCATGTGGTCTATTGGTGGTATTCATGATCAGGGTTGGGCTGAACGGGCGATAT 369336 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 ||||||||||||| |||||||| ||| | ||||| | || |||||| |||| ||| Sbjct 369337 TTGGCAAGATTCGTTATATGAATTATCAGGGTTGCAAGAGGAAATTTGATGTTAAT 369392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909087309760