Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028754.1 Length=120098 Score E Sequences producing significant alignments: (Bits) Value seq253 134 1e-26 >seq253 Length=360942 Score = 134 bits (148), Expect = 1e-26 Identities = 424/653 (65%), Gaps = 8/653 (1%) Strand=Plus/Minus Query 51698 TAACTGT-TGCTTAGTAGACCTTGGTGGCATGCTGAAGAATGGTACTAAAATTGGTAATG 51756 ||||||| |||| | | || |||| |||||| | | ||||| |||||| ||||||| Sbjct 105587 TAACTGTATGCTGATT-GATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATG 105529 Query 51757 CAAATATTGAAACTCCTAAATCCATAACTACTGCATGTGCAATCACTGCTCAGATTATTG 51816 | | || || |||||||||| || | ||||| ||| | || || || ||||| | Sbjct 105528 CCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCG 105469 Query 51817 CCCAAGTATCTGGTGCTCAGTATGGTGGCACCTCTATTGATCGTATCGACGAGGTTCTAG 51876 | |||||| || | | |||||||||||| | || | || || || || | || | Sbjct 105468 CTCAAGTAGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTG 105409 Query 51877 CCCCGTATGTCAGAAAGTCTTACAATAAACATCTGGGTCGTGGGCTACGTTGGCTCAAGG 51936 | || |||||| | || | |||||||| | | | |||| || | Sbjct 105408 CTCCTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAATTGGGGCATTG 105349 Query 51937 ATGAAAGAAAAGCTGCTGTGTATGCTACTGAGCTTACTGAAAAAGAGTGTTATGATGCAT 51996 | || |||| ||| ||||| | | || |||||||| ||||| ||||| | Sbjct 105348 AAGATGCGAAAG--GCT----ATGCTGATAGCCAAACCGAAAAAGAATGTTACGATGCCT 105295 Query 51997 TCCAAGCTCTAGAGTATGAAACTAATTCATTATTTAACTCTAATGGGCAGACCCCTTTTG 52056 ||||| | || || || ||| || || | || | | ||||| || ||||| || | Sbjct 105294 TCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTCG 105235 Query 52057 TTACGCATGGCTTTGGATTAGGTCAGGAGTGGGAGGAAAGGATGATTCAGAAAGCCATCC 52116 | || ||| ||||| ||||| | || | | | |||| || || |||| | Sbjct 105234 TAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACGCTTGATCCAACAATCCATTC 105175 Query 52117 TCCAAAATCGTATTAAAGGTTTAGGTGCTGCTGAGTCAACCCCTATCTTCCCTAAACTAG 52176 | |||| ||||| || |||||| | ||| | | ||||||||| ||| Sbjct 105174 TAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTAG 105115 Query 52177 TATTCTCAGTTAAAGAAGGGTTAAATAAAAATCCAGGCGATCCTAACTACGATATAAAAC 52236 | || | ||||| |||| | ||| | | || ||||||||||| ||||| |||| Sbjct 105114 TGTTTGCTATTAAAAAAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCAAAC 105055 Query 52237 AGCTAGCACTTGAGTGTTCTGCTACCCGTATGTACCCAGACTATTTAAGCTATGAGAAAG 52296 || ||||| | |||||| | | || ||||| || ||| |||| |||||| |||| Sbjct 105054 AGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACAAAG 104995 Query 52297 TTGTAGCTGTTACTGGTGATTTTAAAGCCCCTATGGGTTGTCGTAGCTTTTTA 52349 |||| | ||| || || |||||| | || ||||| || || ||||| ||| Sbjct 104994 TTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTA 104942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384180779218387