Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq87 224 1e-53 seq253 131 2e-25 >seq87 Length=489008 Score = 224 bits (248), Expect = 1e-53 Identities = 485/726 (67%), Gaps = 19/726 (3%) Strand=Plus/Minus Query 139879 TATACACTAAATGGGTATTTAATTGCAGGGTGATATTGATAATCTTGTATCTCAAAATCA 139938 ||||| |||||||||||||||| || || |||||||| ||| | ||||||| Sbjct 413667 TATACCGTAAATGGGTATTTAATCGCTTCATGGCATTGATAACCTTCAAGAGAAAAATCA 413608 Query 139939 TCTACGGTAACCCAGGTTTCAATATCTTCTAAAGATTGAATGTTATCATTAATAATAAGT 139998 || ||| ||||| ||||| | ||||||||| | || ||| | | || || | | | Sbjct 413607 TCAGTGGTTACCCATGTTTCCAGATCTTCTAACGTTTTAATTTGAGGGTTTATCGTTAAT 413548 Query 139999 TTTGGTGCCTCAAATGGCTCTCTAGAGATATGT---TCTGGAACCAATTTAAGTTGGTCT 140055 |||| |||| ||||| | | || || | | || | | ||||| | Sbjct 413547 GATGGTAAAGCAAAAGGCTCGCGTTTTAACTGAACATCGCGCATCAGTGGTAATTGGTTT 413488 Query 140056 TCATAGATATGAGCATTTGTAATTTTATGAAATACACGCCCAAATTTATTGCCGGTAATT 140115 ||||| ||||| ||||| |||||||||| | | || || || || ||||| Sbjct 413487 TCATAAATATGTGCATTCACAATTTTATGATACGCCTTACCCGGTTGATGACCCGTAATC 413428 Query 140116 TGTGCCATTAA-GCGTAATAAAACATAACACTGTACCATATTAAAATTTAATCCCAATGG 140174 | ||||| || ||| | ||| || |||| ||||| |||||||| ||||| | ||| Sbjct 413427 CGCGCCATCAAAGCG-AGTAACACGAAACATTGTACTTGGTTAAAATTCAATCCAAGTGG 413369 Query 140175 GACATCACATGATCTTTGGTATGAAGTTAAATATAATGTGCTATTAACTAAAGAAAAATT 140234 ||||| || | ||| || || ||||| | | || | | | |||||| | Sbjct 413368 TACATCGCAACTACGTTGATAGGAGGTTAAGTGCAGAGTATCACCGAGCAGTGAAAAAGT 413309 Query 140235 ATGTGTATGCATACATGGACGCAAACATCCTAAGTCAAATTCACCTGGGTTCCAGAAAGT 140294 ||| ||||||||||| || || || ||||| | |||||||||||||| || | || || Sbjct 413308 ATGAGTATGCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCTGGATTATAAAACGT 413249 Query 140295 AATAATTTCTCCACGGTCATCAATACCTTGGCTTAAATTATCATATACTTTTCTTAGTTG 140354 ||| ||||| | |||||||||||||| | |||| |||| | |||||| | || || Sbjct 413248 AATGATTTCAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTAAGCTG 413189 Query 140355 GTCTACA---GAACCA---------TTCCAAGAACGTCCTTGGACACCGTAAACACGACC 140402 || | | | |||| | ||| || || ||||||||||| ||||| || || Sbjct 413188 ATCGAGATGCGTACCATCAGGCCGCTGCCATGAGCGCCCTTGGACACCATAAACGCGCCC 413129 Query 140403 CATATCATCGGGTCCTTTACGATTAGGATTATTTAACCATGATTCGTTNNNNNNNNNNNN 140462 ||||||||| |||||||| | || ||||| | ||| | || || Sbjct 413128 CATATCATCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATTCGCATT 413069 Query 140463 NNNNNNCCATGTATTACACCCAATCTCACGAAATTGTGCAGCACTTGAATACCCACGAAG 140522 |||||||||||| || || ||||| ||||| || ||| | ||| || || || Sbjct 413068 TGCATTCCATGTATTACAGCCGATTTCACGGAATTGAGCTGCATTATCATAACCGCGTAG 413009 Query 140523 ATATCCTAGCAGTTCAGCAATAGCAGCTTTATAAAAACTTTTACGTGTAGT-ATCAATAG 140581 || || || || || || || || ||||| ||||||||||| || || || || ||| | Sbjct 413008 GTAACCCAGTAGCTCTGCTATTGCGGCTTTGTAAAAACTTTTTCGGGTGGTGATTAAT-G 412950 Query 140582 GAAATT 140587 |||||| Sbjct 412949 GAAATT 412944 >seq253 Length=360942 Score = 131 bits (144), Expect = 2e-25 Identities = 309/458 (67%), Gaps = 9/458 (2%) Strand=Plus/Minus Query 129002 TTTTGCCACCACGTAAGATAACATGGGTGTTTTGATTACCATTGGCATAAATTTTACTAA 129061 |||| ||||||||||| || || || ||| | |||||| || | || | |||| Sbjct 349278 TTTTACCACCACGTAAAATCACGTGCCCGTTATCATTACCTTTAGTATGCAGCAAGCTAA 349219 Query 129062 TTACACCATTCATATCAATACC--TAAATATGAATGTGGAAATGCTGCGCTTTTAATAGC 129119 | ||| | || || || ||||| || ||||| | || ||| ||| || || Sbjct 349218 CTTGGCCAGACTGATTGATGCCCATAAATCTG--TGTGGCATTGATGCAGCTTTCATCGC 349161 Query 129120 ATCTAAAGCAACTTGAATATC-ACCTGAAGTAGAATTTTTGAATCCAACAGCCATAGGTA 129178 || | |||| | || | | ||| |||| |||||| || ||||||| ||| | || Sbjct 349160 ATTGATAGCAG-TAGATAAGCTACCATCAGTACCATTTTTAAACCCAACAGGCATTGATA 349102 Query 129179 ATCCTGAAGCAATTTCACGATGGGTCTGTGATTCTGTAGTACGAGCACCAATAGCGACCC 129238 | |||||||| || ||||| || || |||||||| || || | ||||| || || || Sbjct 349101 AACCTGAAGCCATCTCACGGTGAGTTTGTGATTCCGTTGTTCTTGCACCGATTGCAGACC 349042 Query 129239 AACTAAAAATACCTGATAGATACTTAATAGTAAATGGGTCCAAGACCTCTGTCGCCAAAG 129298 | ||||| | | | || || | | || ||| || || |||| || ||||||| Sbjct 349041 AGCTAAATAGATCCCCTAAGTATTGTGGATTATTTGGATCTAAAGCCTCAGTTGCCAAAG 348982 Query 129299 GAAGTCCAAGATTCAATAGTTCTAAACAG-AGATGGCGGGCAATTCTTAACCCTTCATCA 129357 | || || | ||||| | | || || | || || ||||| || ||| || Sbjct 348981 GTAGCCCCATATTCACCAAGT-TAGTCAATAAATCACGAGCAATATGTAGGCCTGTTTCC 348923 Query 129358 ATATTAAAAGAACCATTTAATTCTGGGTCGTTGACTAGGCCTTTCCAACCTACAGTTGTG 129417 |||| ||| || |||| | | || ||| ||| ||| ||||||||||| || ||||| Sbjct 348922 ATATCAAATGAGCCATCCATCGCAGGATCGCTGATTAGTCCTTTCCAACCCACGGTTGTA 348863 Query 129418 CGTGGTTTTTCAAAATAAACCCGCATAACCAATAGATA 129455 || ||||||||||||||||| ||||| | ||||| ||| Sbjct 348862 CGAGGTTTTTCAAAATAAACACGCATCA-CAATATATA 348826 Score = 123 bits (136), Expect = 3e-23 Identities = 353/536 (66%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 41621 CTAAATGTTTAGTTCTATGAATAACTTCTTTTTGTTTACCTTCATTAAATCCACGAGAAG 41680 ||||||||||| | | | | ||||||| ||||||||| | |||||| |||| | Sbjct 103987 CTAAATGTTTAATGCGTCGTTTGACTTCTTCTTGTTTACCCGCGTTAAATGGTCGAGCAT 104046 Query 41681 CAGGATTACCAAGATATCCGCAAGTTCGACGAACAACAGACATCTTTTTAGTGTCCATTT 41740 | || |||| ||||| || || || ||| | || || | || ||||| | Sbjct 104047 CTGGGCTACCTAGATAACCACACACTCTACGGATCACGGAGACACGGTTGGTGTCATGGT 104106 Query 41741 CACCACATTTAGGGCATTTAAACCCATTCTCTGTAGGAATAAATTCTCCATGGAAATC-A 41799 |||||| ||||| ||| || || ||| ||||||| || | ||||| | Sbjct 104107 TACCACAACGTGGGCACACAAAACCTTTACTGGTACAGTTAAATTCACCG-GTAAATCCA 104165 Query 41800 CATGTAAAGCATTGGTCAACAGGTGTATTTGTTCCAAAATAATCAAGATTTTCTACAGCA 41859 ||| | | |||| |||| ||| || || |||||| ||||| | || || | ||| Sbjct 104166 CATTCATAACATTCATCAATAGGCGTGTTGGTTCCATAATAAGGTACATGCTC-ATAGCT 104224 Query 41860 -TAATCCCAAACTTGTTCTAATGCTTTTAAATTATCTTTCATATTAGGAAGTTCTACATA 41918 || |||||||| | ||| | |||||| || || | | | || ||| || | || Sbjct 104225 GTAGTCCCAAACGTCTTCAAGTGCTTTCAAGTTGTGCTGTAAGTTTGGATACTCGCCGTA 104284 Query 41919 AGAAATATGACCACCAGTGGCAATACGATGATAATCCTTTTCAAAATCAATTTTTTCAAA 41978 ||||| ||| ||| | || | | | | || || |||||||||||| || || | Sbjct 104285 GCAAATAAAACCGCCATTTGCGAGAGCAGGGTATGGCTGTTCAAAATCAATCTTATCGTA 104344 Query 41979 CGGGTTAAC---TTTACGTTCTACATCAAGGTGAAAACTATTTGTATACCAACCTTTATC 42035 |||||||| ||| ||| ||||||||||| |||||||| || || ||||||| || Sbjct 104345 TGGGTTAACGCGTTT---TTCAACATCAAGGTGGAAACTATTGGTGTAGTAACCTTTTTC 104401 Query 42036 TGTAATTCCTTTAACAGAACCAAATTCTGCTTTATCTAATTTACAGAATCTGTGGCATAG 42095 |||| |||| | | ||||| || || |||| | |||||| | | || | Sbjct 104402 CGTAACACCTTCGATAACCCCAAACTCAGCAGTATCAAGGCGACAGAAACGATCACACAA 104461 Query 42096 ACTTTCAGCAGGAGTAGAATAAAGACTGAATGCATATCCAGTTTCTTCTTTCCATT 42151 ||||| || || |||||| || || |||| || |||||| ||||||||| Sbjct 104462 GTTTTCACTTGGGGTGCTATAAAGGCTAAAACCATAGCCTGTTTCTGCTTTCCATT 104517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518225703254520