Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq87 176 5e-39 >seq87 Length=489008 Score = 176 bits (194), Expect = 5e-39 Identities = 538/822 (65%), Gaps = 15/822 (2%) Strand=Plus/Plus Query 16886 TGAAGGACAATGGGTTAAAAACGAACGAACTGGAACACAATGTCTGACACTAATCAACGC 16945 |||||| |||||| || |||| | || || || | || | || | || || || Sbjct 412855 TGAAGGCCAATGGATTGAAAATAAGCGTACAGGCGTGCGCTGCTTAACCGTCATTAATGC 412914 Query 16946 CGATTTGGTCTATAATGTCGATCAGAACGAAGTTCCTATGGTAACAACTCGCAAAACATT 17005 ||| | | ||| |||| | | ||| || |||| | | || || || |||| || Sbjct 412915 AGATCTTGAATATGATGTGGCAAATAACCAATTTCCATTAATCACCACCCGAAAAAGTTT 412974 Query 17006 TTATCGCGGCGCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAATGCTGCCGA 17065 ||| | ||| || || || || || || || ||||| || || || ||||| || | Sbjct 412975 TTACAAAGCCGCAATAGCAGAGCTACTGGGTTACCTACGCGGTTATGATAATGCAGCTCA 413034 Query 17066 TTTTCGAGCCATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAAGCTTGGTT 17125 || || | || || ||||| ||||||||||| || || || || || |||||||| | Sbjct 413035 ATTCCGTGAAATCGGCTGTAATACATGGAATGCAAATGCGAATGACAATCAAGCTTGGCT 413094 Query 17126 GAAGAATCCCAATCGTAAAGGTGAGGACGATATGGGACGAGTGTATGGCGTTCAGGGTCG 17185 ||| || || | ||||||||||| || |||||||| || || ||||| || || || || Sbjct 413095 GAATAACCCACACCGTAAAGGTGAAGATGATATGGGGCGCGTTTATGGTGTCCAAGGGCG 413154 Query 17186 -TCAGTGGACAAACATGTATGGCGATTCA-CTTGACCAATTGCGCAAAATATACGATAAT 17243 ||| | | | || |||| | || || || || || |||| | | |||| Sbjct 413155 CTCATGGCAGCGGCCTG-ATGG-TACGCATCTCGATCA---GCTTAAAAAAGTGGTTAAT 413209 Query 17244 --CTT-CGAAATCGAAAAGATGACCGTGGTGAAATTCTGACTTTCTGGAATCCAGGTGAA 17300 ||| |||| | | |||||||| | |||||| | || || | |||||||||||| Sbjct 413210 AACTTAAAAAATGGTATTGATGACCGCGCTGAAATCATTACGTTTTATAATCCAGGTGAA 413269 Query 17301 TTCGAATTCGGATGTCTGCGTCCTTGTATGCACACCCATCAATTCAGTATTCTAGGTGAT 17360 || ||| | ||||| | || ||||||||||| || ||| || | || |||||| Sbjct 413270 TTTGAAATGGGATGCTTACGGCCTTGTATGCATACTCATACTTTTTCACTGCTCGGTGAT 413329 Query 17361 AAGCTTTATCTGAACAGTTTTCAGAGAAGTAACGATCTGCTATTAGGTCAGGTTTTCAAT 17420 | || | | | | | ||| | ||| |||| | | | | || | ||| || Sbjct 413330 ACTCTGCACTTAACCTCCTATCAACGTAGTTGCGATGTACCACTTGGATTGAATTTTAAC 413389 Query 17421 CAGATTCAGTGTTTTGTCTTGCTCAAACTGATGGCTCAAATTACAGGATTAAAACCTGGA 17480 || | || ||||| || || ||| ||||||| | ||||| || |||| || Sbjct 413390 CAAGTACAATGTTTCGTGTTACTCGCTTTGATGGCGCGGATTACGGGTCATCAACCGGGT 413449 Query 17481 AAGGCTTATCATAAAATTGTAAATGTTCACATTTACGATAATC-AGTACGAGGTGTTGAT 17539 ||||| |||||||||||||| |||| || ||||| || || | | ||| | |||| Sbjct 413450 AAGGCGTATCATAAAATTGTGAATGCACATATTTATGAAAACCAATTACCA----CTGAT 413505 Query 17540 GAAGGAAGGACAACTAAACAGAGTTCCATTTAAAGCACCGACCATGTGGATTAATCCAGA 17599 | || | || |||| | | || ||| ||| | | ||| || || | Sbjct 413506 GCGCGATGTTCAGTTAAAACGCGAGCCTTTTGCTTTACCATCATTAACGATAAACCCTCA 413565 Query 17600 AATTAAAACTTTAGAAGATGTTTTAACGTGGGTTACTCCTGATGATTTTGTAGTCGAAGG 17659 ||||||||| ||||||||| | ||| ||||| || ||||||||||| | ||||| Sbjct 413566 AATTAAAACGTTAGAAGATCTGGAAACATGGGTAACCACTGATGATTTTTCTCTTGAAGG 413625 Query 17660 CTATGAACATCATCCTGCAATCAAATATCCTTTTAGCGTATA 17701 ||| || ||| || || ||||| || |||| ||||| Sbjct 413626 TTATCAATGCCATGAAGCGATTAAATACCCATTTACGGTATA 413667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582723522165400