Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq1596 107 2e-18 seq253 98.7 1e-15 >seq1596 Length=248270 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 101994 TATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCG 102053 ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||| Sbjct 48828 TATCCACAACTGACTATCCGTGTATCGGGTTATGCGGTGCGTTTTAACTCTCTGACTAAA 48887 Query 102054 GAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTGTAAT 102102 |||||||||| |||||||| ||||||| |||||| | | |||||| Sbjct 48888 GAACAGCAGCAAGACGTTATTACTCGTACTTTCACCAGTACTCTGTAAT 48936 >seq253 Length=360942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 438/682 (64%), Gaps = 25/682 (4%) Strand=Plus/Minus Query 120268 AACGGATTTAAGCTAGGTAATGCACAGATTGAAACTCCTAAATCAATTGGCGTTGCTACT 120327 || || ||||| | |||||||| | || || |||||||||||||| | ||| || Sbjct 105550 AATGGGTTTAAAATGGGTAATGCCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACC 105491 Query 120328 GCAATTATGGCACAAATTACTGCACAGGTTGCTTCTCACCAATACGGCGGAACGACTTTT 120387 ||| | | || ||||||| || || || ||| || || || || || || | Sbjct 105490 GCAGTGACAGCCCAAATTATCGCTCAAGTAGCTAGCCATATTTATGGTGGCACCACCATC 105431 Query 120388 G--CGAATGTAGATAAAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAAACATATTG 120445 || || ||| || | ||| |||||||||| | || ||||| ||||||| | Sbjct 105430 AACCGCATT--GATGAAATCCTTGCTCCTTATGTCCACATCAGCTATGAAAAACATCTAA 105373 Query 120446 AGGATGCAGAAAAATGGCAAATCGCCGATGCGTTGAATTATGCTCAATCTAAAACAGAAA 120505 | || || ||| || | |||||| |||||| | |||| |||| Sbjct 105372 AAACAGCGATCAATTGGGGCATTGAAGATGCGAAAGGCTATGCTGATAGCCAAACCGAAA 105313 Query 120506 AAGACGTATACGATGCATTCCAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAA 120565 |||| |||||||| |||||| | |||||| ||||| || || || || | | Sbjct 105312 AAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCA 105253 Query 120566 ACGGACAGACTCCTTTTGTAACAATTACATTTGGTACGGGAAC-TGACTGGACTGAACGA 120624 | || || || || || ||||| || |||||| || || | | || | ||| Sbjct 105252 ATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA-GCACGC 105194 Query 120625 ATGATTCAGAAAGCAATTCTGAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACT 120684 |||| || || | ||||| ||||| ||||| || | ||| || | | |||| Sbjct 105193 TTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACT 105134 Query 120685 CCTATTTTCCCTAAGCTTGT-TATGTTCGTTGAAGAAGGTGTTAATCTTTATAAAGACGA 120743 | |||||||||| | || | || | || || |||| |||||| | | | || Sbjct 105133 GCCGTTTTCCCTAAATTAGTGTTTGCTA-TTAAAAAAGGCCTTAATCACCAATATGGTGA 105075 Query 120744 TCCGAACTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGGATGTATCCTGA 120803 ||| ||||||||||| || ||| | || ||||||| || |||||| | |||||||| || Sbjct 105074 TCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGA 105015 Query 120804 TATTATTTCAGCTAAGAACAATAAAGCTATCACTGGTTCATCTGTTCCTGTTT----CTC 120859 || || | ||| | | |||| | || || | | | || |||| | | Sbjct 105014 CAT--CTTAAACTATG----ACAAAGTTGTCGATG--TAACGGGCTC--GTTTAAAACGC 104965 Query 120860 CAATGGGTTGCCGTAGTTTCTTGAGCGTATGGAAAGATTCGACTGGTAATGAAATTCTTG 120919 ||||||| ||||| || ||||| | || | |||| | ||| | |||||| || Sbjct 104964 CAATGGGCTGCCGCAGCTTCTTAGGTGTCTACGAAGA---AAATGGCCAACAAATTCATG 104908 Query 120920 ATGGACGTAATAATCTTGGTGT 120941 |||| ||||||||| | ||||| Sbjct 104907 ATGGCCGTAATAATTTAGGTGT 104886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534657351404320