Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028799.1 Length=66708 Score E Sequences producing significant alignments: (Bits) Value seq87 93.3 2e-14 seq410 91.5 6e-14 >seq87 Length=489008 Score = 93.3 bits (102), Expect = 2e-14 Identities = 195/284 (69%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 12051 TGGTATTGATGACAGGGGTGAGATTATTACCTTCTGGAAACCAGATGACTTCGATAAAGC 12110 ||||||||||||| | | ||| || ||||| || | || |||| ||| || || | | Sbjct 413221 TGGTATTGATGACCGCGCTGAAATCATTACGTTTTATAATCCAGGTGAATTTGAAATGGG 413280 Query 12111 TTGTTTACGTCCTTGTATG--TTCCAACATCATTTCACTTTGATTGATGACCAACTAT-C 12167 || ||||| ||||||||| | | | | |||||| || | | ||| ||| | | Sbjct 413281 ATGCTTACGGCCTTGTATGCATACTCATACTTTTTCAC--TGCTCGGTGA--TACTCTGC 413336 Query 12168 ACTT-ACTTCGTATCAGCGTAGTTGTGATGTTCCGTTAGGGCTAAACTTTAACATGATTC 12226 |||| || || ||||| |||||||| ||||| || | || | || |||||| | | Sbjct 413337 ACTTAACCTCCTATCAACGTAGTTGCGATGTACCACTTGGATTGAATTTTAACCAAGTAC 413396 Query 12227 AAGTATATGTATTCTTGGTTCTAATGGCTCAGATTACAGGTAATCAACCATTGGGTGCTA 12286 || | || || | | | | ||||| | |||||| ||| ||||||| |||| Sbjct 413397 AATGTTTCGTGTTACTCGCTTTGATGGCGCGGATTACGGGTCATCAACC---GGGTAAGG 413453 Query 12287 CGCACCAT---ATTGTGAATGCTCATATGTATGAAGACCAAGTA 12327 || | ||| ||||||||||| ||||| |||||| ||||| || Sbjct 413454 CGTATCATAAAATTGTGAATGCACATATTTATGAAAACCAATTA 413497 >seq410 Length=72445 Score = 91.5 bits (100), Expect = 6e-14 Identities = 181/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 54597 TTGACCATTAGCACTACGTGCCATTGCATCAATCATCCCACGAGTTAATGCACCAATTAA 54656 ||||||| ||||| |||| | || ||||||||| |||| || ||||||| | Sbjct 31473 TTGACCACTAGCAGTACGACCAATGATATCAATCATTGCACGTTCTAGTGCACCAGAAAT 31414 Query 54657 TTTTTGGTTATCTGATAGTAATTCAGCATCTGCTTCGCCATATACAGAATCTTTAACAGG 54716 ||| ||||||| | | ||| ||||| | ||| ||| | ||| | ||||||| Sbjct 31413 ACGTTGATTATCTGCAATAAGTTCTGCATCAGGTTCACCAAAAACACTGCCAGTAACAGG 31354 Query 54717 TAAGTAAGGAACTACTACAAATGGTAATTTACCGTCAGGGTATGGATTCTTCTCTAAACG 54776 | || | | ||| |||| || ||||| || ||||| |||||||| | || |||| Sbjct 31353 CATATAGGCAGAAACTTCAAACGGGAATTTTCCATCAGGATATGGATTTCTATCACAACG 31294 Query 54777 AATCATTACATCATCAACCCAAGATGCAACAATAGGTG-TAGTTACACCTGAACCATCAA 54835 ||| |||| ||| | || | | | |||| |||| || | |||| ||| |||| Sbjct 31293 AATAATTAAGTCACCTACATAGGCAACCACAACAGGTTCTAACT-CACCATTACCTTCAA 31235 Query 54836 TATCCCA-ATATCCCCAATACTC 54857 ||||||| ||| ||||||||||| Sbjct 31234 TATCCCACATA-CCCCAATACTC 31213 Score = 89.7 bits (98), Expect = 2e-13 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 60065 AATCCACCTTGTTGACCAGTAACTTCTATACCTACATCAATTGGTTTATATATCTGAACC 60124 || |||| ||| ||||| || ||||||| ||| ||| ||| ||||| || |||||| Sbjct 22777 AAACCACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAACC 22718 Query 60125 AATCTAAATAAATCTTCAATAGTTA-CATCTATGGTTTGTCTCTTACAAATACCATCAAC 60183 | ||| |||||||| | || |||| | || || |||| |||| ||||||||||| || Sbjct 22717 AGTCTGAATAAATCATTAAG-GTTAGCGTCCATCTCTTGTTTCTTGCAAATACCATCTAC 22659 Query 60184 CCAATAGAAGTAACCTTTATTAT-TTACTGCCCACACAGATATTACACTAAAGTCAGCTT 60242 | | || | | ||||| || | ||| ||||| ||| || ||||| ||||||| Sbjct 22658 CAAGTACCAATTACCTTGATAGTCATAC-GCCCAAACAATAATGACACTGTAGTCAGC-A 22601 Query 60243 GTTTCTTTTCACTAG-TGGCAAAGTCAGTAGTAATATAA 60280 | ||||| | || |||||||| || ||||| ||| Sbjct 22600 CTCTCTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAA 22562 Score = 84.2 bits (92), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 31500 CTAGAACTTTATGACGGAG---TAGTTAAACCAAAGTTAACCAAGAATACTGCTGAATCT 31556 || ||| | ||||||| || |||||||||| || |||| || || ||| |||| | Sbjct 56811 CTTGAATTATATGACGTAGGGTTAGTTAAACCTAAACTAACAAAAAACACTTCTGACAGT 56752 Query 31557 GTACGTAATGAAGAAATTGAGGGTAAGACACCAACTAATATGTTGATGTATGGCACT 31613 |||||||||||| ||||| || | |||||| ||||||||||||||| || ||| Sbjct 56751 ACACGTAATGAAGATATTGACGGAAGAACACCAGCTAATATGTTGATGTTCGGAACT 56695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 213336346044117