Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq253 183 5e-41 >seq253 Length=360942 Score = 183 bits (202), Expect = 5e-41 Identities = 532/808 (66%), Gaps = 26/808 (3%) Strand=Plus/Plus Query 125865 GCTTCAATAGCAATACGCGGGATATTGATTGAGACGACGCCTAAGTTATTACGACCATC- 125923 |||||||| ||||||||||| | || | | ||| ||||| |||||||| ||||| Sbjct 104850 GCTTCAATGGCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCA 104909 Query 125924 -GAATACCGTTTCACCATCTTCGTTCTTCCAGTCACCCAAGAATGAGCGACAGCCCATTG 125982 |||| || |||| ||| ||| | || |||| ||||| ||| |||||||||| Sbjct 104910 TGAATTTG--TTGGCCATTTTC-TTCGT--AGACACCTAAGAAGCTGCGGCAGCCCATTG 104964 Query 125983 GAGACTTAAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACA 126042 | | |||||| || || || || | |||||||||||| || ||||| || |||| Sbjct 104965 GCGTTTTAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAGATGTCGGGATACA 105024 Query 126043 TACGCTTACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCACGGGTCGCCTTCTT 126102 | || || || ||||| || | ||||||| |||||| | ||| || || || | || Sbjct 105025 TGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATT 105084 Query 126103 TCAGATTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAATAGCAGTTTTCTTAG 126162 |||| | ||| | | | | | || || | |||||||||| |||||||| | Sbjct 105085 GGTGATTAAGGCCTTTTTTAATAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGAT 105144 Query 126163 TCTTACCTAGACCTGCAATACGATTCTGAAGAATACTTTTTTGAATAAGTTTTTCTTCCC 126222 | ||||||| || || ||||| || | ||||| || ||| || | | |||| Sbjct 105145 TTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGCTTCTT 105204 Query 126223 ACGACGTACCTAACCCGAAGTTGATTGTCGTGAATGGTGTCTGACCGTTTGAAGTCTGCA 126282 ||| || ||||| || || | || ||| || || ||||| || | || |||| Sbjct 105205 GCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCA 105264 Query 126283 TCGTATTGACTTGATATTCAAACGTCTGGAATGCATCGAACGTTTCCTTTTCAACACGCT 126342 || || |||| ||||||| | ||||| |||||| | ||| |||| || | Sbjct 105265 GTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTT-----CGGT 105319 Query 126343 TTCG-TGCAAAGATAGCAGCTTTAGAATCAGAGTCGGGATGTTCTTCTCGA--CCTACTT 126399 || | | | ||||| |||| | ||| || ||| | | || || || Sbjct 105320 TTGGCTATCAGCATAGC--CTTTCGCATC---TTC--AATGCCCCAATTGATCGCTGTTT 105372 Query 126400 CGAGCCATTTATAATA--TGACTTACGAACATAAGGTGCTAGGACTTCGTCGATTCTATT 126457 || ||| | ||| ||| | | |||||||| || |||| ||| || || | || Sbjct 105373 TTAGATGTTTTTCATAGCTGA--TGTGGACATAAGGAGCAAGGATTTCATCAATGCGGTT 105430 Query 126458 GATCGTGTTACCGCCGTAGATATGGCTACTTACTTGCTGAATAATCTGAGTTACAACAGT 126517 ||| ||| | || || || ||||||||| |||||| ||||| || | | || | Sbjct 105431 GATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGC 105490 Query 126518 GGCAGCAGTGCTAATACTGTTTGGTTCTTCGATTTCAGCATTACCCATTTTGAAGCCGCC 126577 || |||||| ||| || || || ||||| |||||||||||||| || || Sbjct 105491 GGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 Query 126578 TTCAAACATGCCTTTGATATCAATAAGCATACAGTTGAATTGCGGGAATAATGGACTGTA 126637 |||||||||| | |||||| ||||||||||| || ||||| ||||| || Sbjct 105551 AGTTAACATGCCTTCAAGATCAATCAGCATACAGTTAAACATGGGGAAAAATGGCGCATA 105610 Query 126638 GTCAAGGTCATGAAAATGAATATCGCCG 126665 || || || ||| ||||||| || ||| Sbjct 105611 ATCGAGATCGTGATAATGAATTTCACCG 105638 Score = 100 bits (110), Expect = 5e-16 Identities = 206/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 || ||||| ||| || || |||| | ||||| | | || || |||| | || Sbjct 104226 TAGTCCCAAACGTCTTCAAGTGCTTTCAAGTTGTGCTGTAAGTTTGGATACTCGCCGTAG 104285 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAAT 125357 || || ||||| || ||||| || ||||||| |||||||||||| || || || Sbjct 104286 CAAATAAAACCGCCATTTGCGAGAGCAGGGTATGGCTGTTCAAAATCAATCTTATCGTAT 104345 Query 125358 GGGTTCACT--TTCTTGAACACGTCTAAGTG-AAACGAGTTTGTGTAATAGTCTTTGTCA 125414 ||||| || || || |||| || | ||| |||| | || ||||| || |||| || Sbjct 104346 GGGTTAACGCGTTTTTCAACA--TCAAGGTGGAAACTA-TTGGTGTAGTAACCTTTTTCC 104402 Query 125415 TTGATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGC 125474 | | |||| ||||| || | | | || || ||||||||||||||||| | Sbjct 104403 GTAACACCTTCGATAACCCCAAACTCAGCAGTATCAAGGCGACAGAAACGATCACACAAG 104462 Query 125475 GATTCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCG 125534 ||||||||| || || || || || ||||| ||||| || | |||||||| ||||| Sbjct 104463 TTTTCACTTGGGGTGCTATAAAGGCTAAAACCATAGCCTGTTTCTGCTTTCCATTCATCG 104522 Query 125535 GT 125536 || Sbjct 104523 GT 104524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793736603751040