Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq253 116 4e-21 >seq253 Length=360942 Score = 116 bits (128), Expect = 4e-21 Identities = 458/709 (65%), Gaps = 25/709 (4%) Strand=Plus/Plus Query 40262 GCAATACGAGGAAGATTTAATGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 40321 |||||||| || || || | | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 40322 TTACCAGTCGAATCTTTCCATACGCCCAAGAAACTACGACAACCCATTGGAG----AAAC 40377 | ||| | |||| | || || ||||| || || || |||||||| | |||| Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC 104975 Query 40378 AGGAATAGATGAACCAGTGATAGCTTTGTTATTCTTAGCTGAAATGATATCAGGATACAT 40437 || | | || || | |||||| || || | || ||| || |||||||| Sbjct 104976 --GAGCCCGTTA--CATCGACAACTTTGTCAT----AGTTTAA--GATGTCGGGATACAT 105025 Query 40438 TCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTTGGGTCGTCTTTATA 40497 | |||||| ||||||||||| || | ||| || ||||||||||| || || | | | Sbjct 105026 GCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTG 105085 Query 40498 AAGATTAACACCTTCTTCAACGAACATA-ACAAGTTTAGGGAAAATAGGAGTTATCCCAT 40556 |||||| |||| || || | || | || | ||||||||||| | |||| | | || Sbjct 105086 GTGATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGAT 105144 Query 40557 CACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCC 40616 ||| | || ||||| ||||| ||||| | || || |||| ||| | || Sbjct 105145 TTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCT 105203 Query 40617 AGTCA-GTTCCAGTACCAAATGTAATTGTCACAAAAGGAGTCTGACCATTTGAACTAAAG 40675 | | || || |||||| || || || || || || |||||||| | || Sbjct 105204 TGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGC 105263 Query 40676 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACGTCTTTTTCTGTTTTA 40735 || || || ||||| |||||| | |||||| ||||| || |||||||| |||| Sbjct 105264 AGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGG 105323 Query 40736 GATTGAGCATAATTCAACGCATCAGTGATTTGCCATTTTTCCGCGTCCTCAATATGTTTC 40795 | |||||| |||||| || ||| || ||| | | |||||| Sbjct 105324 CTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTT 105383 Query 40796 GCATAGGTACGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTTC 40853 ||||| | | |||||||||| ||| | || ||| || || | || || | Sbjct 105384 TCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTGC 105441 Query 40854 CGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACAC 40913 | ||||| |||| ||| || || || ||||||| || | | ||| || ||| Sbjct 105442 CACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGG 105501 Query 40914 TGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAACCCGTT 40962 ||||||||||||| || || | |||||||| | |||||||| || Sbjct 105502 AAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544935531318080