Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq253 190 2e-43 >seq253 Length=360942 Score = 190 bits (210), Expect = 2e-43 Identities = 549/839 (65%), Gaps = 7/839 (1%) Strand=Plus/Plus Query 38324 CGTTCTTCAAAAATTTCCCAGAAGACTTCTTTATCCCCTTCTGATTCAATAGCAATACGT 38383 |||||||| | || ||| || | |||| || |||| | |||||| |||||||| Sbjct 104808 CGTTCTTCGAGTCGTTGCCAAAACGCGTCTTCATTGCCTTGCGCTTCAATGGCAATACGC 104867 Query 38384 GGTAAGTTAAGGGTTACTACTCCTAAATTCATACGACCAGAGTTTACTTCGTTTCCATGT 38443 || | ||||||| | | || |||||||| |||| ||| | | || | |||| | Sbjct 104868 GGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT 104927 Query 38444 TCATCTTTCCATCCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATGAACCTGTT 38503 || || | ||| ||||| || || ||||| || |||||| || || ||| Sbjct 104928 TCTTCGTAGACACCT---AAGAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAGCCCGTT 104984 Query 38504 AGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCT-GAACATTC 38562 | || |||| |||||||||||| || || || || ||||| ||||| ||| | ||| || Sbjct 104985 ACATCGACAACTTTGTCATAGTTTAAGATGTCGGGATACATGCGTTT-GCTCGCACACTC 105043 Query 38563 TAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGGTTAACTCCGTCTTT 38622 ||||||||||||||| | ||||||||||| || | || | |||| || | ||| Sbjct 105044 TAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTT 105103 Query 38623 AATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGACCTTGGAT 38682 ||||| |||| |||||||||||| | || || | | | | |||| || ||| Sbjct 105104 AATAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGAT 105163 Query 38683 ACGTACTTTAAAAATAGCTTTTTGGATTTCTCTTTCCCAACGTCCAGTACCTAAACCAAA 38742 ||| ||| | ||| | || |||||| | | | | || ||||||||||| Sbjct 105164 ACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGCTTCTTGCGATGTGCCTAAACCAAA 105223 Query 38743 ACCAATAGACGTGAAAGGGGTCTGACCATTCGATGTAAATAACGTATTGATTTCATACTC 38802 |||| | ||| ||||| |||||||| | ||| | || || | ||| || || Sbjct 105224 CCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTC 105283 Query 38803 TAGGCTTTGCATTGCATCGTAAATATCTTTGTTTGTTTTCTCGAT-TGCATATGTTTCTG 38861 ||| ||| | ||||||||| ||||| || | ||| | || ||||| || | Sbjct 105284 AAGGGATTGGAAGGCATCGTAACATTCTTT-TTCGGTTTGGCTATCAGCATAGCCTTTCG 105342 Query 38862 GTTCGGGAATACGGTAACGTTTAGCATCCGCCATATGTTTTTGATAATTCATTTCGGCAT 38921 || ||| | || | || | |||||||| ||| | || | | ||| Sbjct 105343 CATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACAT 105402 Query 38922 AAGGTGCTAATACTTCATCAATGCGGTCAAATGAACAACCCCCATACTGACTGGAAGCCA 38981 |||| || | | |||||||||||||| | | || ||||| | | ||| | Sbjct 105403 AAGGAGCAAGGATTTCATCAATGCGGTTGATGGTGGTGCCACCATAAATATGGCTAGCTA 105462 Query 38982 CATTCGCAATAATTTGTGCTGTTTGTGCTGTAGCTGTTTGAATGGAATGAGGTGAACCGA 39041 | | || |||||||| ||||| ||| || || || ||| || | ||| | | | Sbjct 105463 CTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTA 105522 Query 39042 TTTCTGCATTACCCATTTTAAACCCGTTCTTCAACATATATTCAAAGTCAATCAAACAAC 39101 |||| |||||||||||||||||||| || | ||||| ||||| ||||||| || Sbjct 105523 TTTCGGCATTACCCATTTTAAACCCATTAGTTAACATGCCTTCAAGATCAATCAGCATAC 105582 Query 39102 AATTTGTCATTGGACGATAAGGTTGGTAGTCTAAATCGTGATAATGAATATCTCCACGT 39160 | || ||| || | | || || || | ||||||||||||||| || || ||| Sbjct 105583 AGTTAAACATGGGGAAAAATGGCGCATAATCGAGATCGTGATAATGAATTTCACCGCGT 105641 Score = 125 bits (138), Expect = 7e-24 Identities = 293/435 (67%), Gaps = 24/435 (6%) Strand=Plus/Plus Query 37606 GTCATTATTACCACATTGCGGGCATTCATAACCAT--CTGATGTAGGGTTAAACTCTCCA 37663 ||||| |||||||| | ||||| || |||| | ||| ||| |||||| || || Sbjct 104099 GTCATGGTTACCACAACGTGGGCACACAAAACCTTTACTG--GTACAGTTAAATTCACCG 104156 Query 37664 TCAAAACCGCATTCATGACATTTATCAATTGGGGTGTTTGTTCCAAGATAACCAACTTTA 37723 ||| || ||||||| ||||| |||||| || ||||| |||||| |||| || | Sbjct 104157 GTAAATCCACATTCATAACATTCATCAATAGGCGTGTTGGTTCCATAATAAGGTACATGC 104216 Query 37724 TCGTAGCTGTAGTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGTAT 37783 || ||||||||||||||||| |||| | || || | |||||| || || || || Sbjct 104217 TCATAGCTGTAGTCCCAAACGTCTTCAAGTGCTTTCAAGTTGTGCTGTAAGTTTGGATAC 104276 Query 37784 TCTACATAATGGATAAAACCAC------CGGAAGCATATTTTGGAAACTCTTTTTCAAAA 37837 || | || |||||||| | || |||| | ||| | ||||||| Sbjct 104277 TCGCCGTAGCAAATAAAACCGCCATTTGCGAGAGCAGGGTATGG------CTGTTCAAAA 104330 Query 37838 TCAATCTTTTCAAAAGGTGTTGGAGC-TTTGCGAACATCATAGTGGAAGCTATTTGTATA 37896 |||||||| || | || ||| || ||| ||||||| |||||| ||||| || || Sbjct 104331 TCAATCTTATCGTATGG-GTTAACGCGTTTTTCAACATCAAGGTGGAAACTATTGGTGTA 104389 Query 37897 ATATTCTTTATCTGTGATATTCTCAATAACTCCGTATTTTTCTGTATCCATGCGACAGAA 37956 || |||| || || | | || ||||| || | | | ||||| | ||||||||| Sbjct 104390 GTAACCTTTTTCCGTAACACCTTCGATAACCCCAAACTCAGCAGTATCAAGGCGACAGAA 104449 Query 37957 TCTATCAGTTAAACTTTCACTTGGTGTTGAGTAGATAG---AGAACCAGATTCCTGTTTC 38013 | |||| || |||||||||| || || | || | ||||| | |||||||| Sbjct 104450 ACGATCACACAAGTTTTCACTTGGGGT--GCTATAAAGGCTAAAACCATA-GCCTGTTTC 104506 Query 38014 TTTTGTCCATTCATC 38028 | | |||||||||| Sbjct 104507 TGCTTTCCATTCATC 104521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472146689942520