Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq253 118 1e-21 seq1596 95.1 1e-14 >seq253 Length=360942 Score = 118 bits (130), Expect = 1e-21 Identities = 356/543 (66%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 139056 AACGGATTTAAATTAGGCAATGCTCAAATTGAAACGCCTAAATCTATTGGCGTTGCTACT 139115 || || |||||| | || ||||| |||| || | |||||||| ||| | ||| || Sbjct 105550 AATGGGTTTAAAATGGGTAATGCCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACC 105491 Query 139116 GCAATTATGGCACAAATTACTGCNNAAGTTGCTTCCCATCAATACGGCGGAACGACTTTT 139175 ||| | | || ||||||| || |||| ||| |||| || || || || || | Sbjct 105490 GCAGTGACAGCCCAAATTATCGCTCAAGTAGCTAGCCATATTTATGGTGGCACCACCAT- 105432 Query 139176 GCTAATGTA--GATAAAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAAACATATTG 139233 | | | | ||| || | ||| |||||||||| | || ||||| ||||||| | Sbjct 105431 -CAACCGCATTGATGAAATCCTTGCTCCTTATGTCCACATCAGCTATGAAAAACATCTAA 105373 Query 139234 AGGATGCAGAAAAATGGCAAATCGCTGATGCGTTAAATTATGCTCAATCTAAAACAGAAA 139293 | || || ||| || | |||||| | |||||| | |||| |||| Sbjct 105372 AAACAGCGATCAATTGGGGCATTGAAGATGCGAAAGGCTATGCTGATAGCCAAACCGAAA 105313 Query 139294 AAGACGTATACGATGCATTCCAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAA 139353 |||| |||||||| |||||| | |||||| ||||| || || || || | | Sbjct 105312 AAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCA 105253 Query 139354 ACGGACAAACGCCTTTTGTAACAATTACATTTGGTACGGGAAC-TGACTGGACTGAACGA 139412 | || ||||| || || ||||| || |||||| || || | | || | ||| Sbjct 105252 ATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA-GCACGC 105194 Query 139413 ATGATTCAGAAAGCAATTCTGAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACT 139472 |||| || || | ||||| ||||| ||||| || | ||| || | | |||| Sbjct 105193 TTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACT 105134 Query 139473 CCTATTTTTCCTAAACTTGT-TATGTTCGTTGAAGAAGGTGTTAATCTTTATAAAGACGA 139531 | |||| |||||| | || | || | || || |||| |||||| | | | || Sbjct 105133 GCCGTTTTCCCTAAATTAGTGTTTGCTA-TTAAAAAAGGCCTTAATCACCAATATGGTGA 105075 Query 139532 TCCGAACTATGATATTAAGCAGCTTGCGTTAGAATGTGCAAGCAAAAGAATGTATCCTGA 139591 ||| ||||||||||| || ||| | || ||||| ||||| |||||| | |||||||| || Sbjct 105074 TCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGA 105015 Query 139592 CAT 139594 ||| Sbjct 105014 CAT 105012 >seq1596 Length=248270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 123189 TATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTGACTCCG 123248 ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||| Sbjct 48828 TATCCACAACTGACTATCCGTGTATCGGGTTATGCGGTGCGTTTTAACTCTCTGACTAAA 48887 Query 123249 GAACAGCAGCGCGACGTTATCGCTCGCACCTTTAC 123283 |||||||||| |||||||| |||| || || || Sbjct 48888 GAACAGCAGCAAGACGTTATTACTCGTACTTTCAC 48922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539927638551880