Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029101.1 Length=72192 Score E Sequences producing significant alignments: (Bits) Value seq410 100 1e-16 >seq410 Length=72445 Score = 100 bits (110), Expect = 1e-16 Identities = 224/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 9086 GGTGCCAAGACTGGTGTCCGTGGTGCGAAGGAGATG---GGTAAACGTCCGCAGCTTGCG 9142 ||||| ||||| ||| |||||||| || | ||| ||||| ||||| || || Sbjct 22068 GGTGCTAAGACAGGTATCCGTGGT---AATAAAATGTATGGTAAGCGTCCTACCCTGGCT 22124 Query 9143 GTACTGGATGACTTGGTTTCGGACGAAGATGCTCGCTCGCCCACTGTCATCGCAGCCATC 9202 ||||| |||||||| || ||||| |||||| || || | || | ||| || Sbjct 22125 GTACTTGATGACTTAGTGAGTGACGAGGATGCTAAGTCTAAAACAGAAATGGAAGCGATT 22184 Query 9203 GAGGACACGGTGTACAAGGCAGTGGACTATGCACTGCACCCGAAGAAGAACATGATCATC 9262 ||||||| ||||| || | || ||| |||| || |||| | ||||| | ||| || Sbjct 22185 AAGGACACTGTGTATAACGGTGTTGACCATGCCCTTGACCCAACAAAGAAAAAGATTGTC 22244 Query 9263 TGGTCGGGTACACCGTTCAACGCGAAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCT 9322 | ||||| || || || ||| ||| | || | || || ||||| || | | Sbjct 22245 TTTAATGGTACGCCTTTTAATAAGAATGATGTTCTATATGAGGCCGTTGAGTCAGGCGGT 22304 Query 9323 TGGAAGGTCAACGTCTACCCGGTATGTGAGCGGTTCCCCTGCTCGCGGGAAGAGTTCCGT 9382 ||| | || ||||| ||||| | |||||||| ||||| || | || || | Sbjct 22305 TGGTACGTTAACGTTTACCCTATCTGTGAGCGCTTCCCTTGTGAAGAACATGAATTTGTT 22364 Query 9383 GGTGCATGGCCTGACCGATTCACCTACGACTTCGT 9417 |||||||||||||| |||||| | || || || || Sbjct 22365 GGTGCATGGCCTGAGCGATTCTCGTATGAATTTGT 22399 Score = 91.5 bits (100), Expect = 7e-14 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 15730 CACTACATCCCGCTGCTCGACGACCGCAACGTGAACGACCAGGGCATCGACGCTTCCGGC 15789 |||||||| || |||| || ||||| |||||||||||||| || ||||| ||||| ||| Sbjct 34303 CACTACATTCCATTGCTGGATGACCGTAACGTGAACGACCAAGGTATCGATGCTTCTGGC 34362 Query 15790 GCTACCATCGCCAACGGCAACCTCTACGGTTCGAGCCGTGACGTGGGCAACATCACTGCG 15849 | || ||| | || ||| | |||||||| ||||| || || ||| || Sbjct 34363 GTTAAAATCAAAGATGGTAACTTATACGGTTCTTCTAAAGACGTTGGTAAAATCCTTGAT 34422 Query 15850 AAAATGCCGACCCTCACCGAAATCGGCGGTCGTGTGAACCGTGTTGGT 15897 ||||||||| | | ||| || |||||||| |||||||||||| Sbjct 34423 AAAATGCCGTACATGGGTGAAGAAGGTGGTCGTGTTAACCGTGTTGGT 34470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230884779674529