Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq964 125 5e-24 seq1190 105 5e-18 seq1304 102 6e-17 >seq964 Length=291957 Score = 125 bits (138), Expect = 5e-24 Identities = 176/244 (72%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 27776 AACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTG 27835 || |||||| ||||||||||| || ||||| ||| | ||||| || || || ||| Sbjct 215171 AAAACAATAA-AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTG 215229 Query 27836 ATGTCGAAAGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGG 27893 | |||||| | || |||| | ||| || || ||||| || || || || Sbjct 215230 AGGTCGAACCTTCGGATACGATTGAAAAT--GTTAAGGCTAAAATTCAAGATAAGGAGGG 215287 Query 27894 TGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG 27953 | |||| || || ||||| ||||||||||||| ||||||||||| |||| ||||| Sbjct 215288 TATTCCCCCAGATCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCAC 215347 Query 27954 CTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGG 28013 ||||||||||| || || |||||||| ||| | || |||||| | ||||||||||| Sbjct 215348 TTTGTCCGATTATAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGG 215407 Query 28014 CGGC 28017 ||| Sbjct 215408 TGGC 215411 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| || |||||||| || ||||||||||| Sbjct 215505 GACAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAA 215564 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| ||||| ||||| || || |||||||| || ||||||||||| || Sbjct 215565 GACGGGCGCACATTGTCTGATTATAATATACAAAAAGAATCTACATTGCATTTGGTATTA 215624 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 215625 CGTTTGCGTGGTGGC 215639 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| |||||| | || || ||| | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | || || || ||| ||||| |||||||||||| |||| || || Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||| || || ||||| ||||| || | |||| || |||||||| ||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || | || ||||| |||||||||||||| || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 215866 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || || ||||| || || |||||||| ||||||||||| Sbjct 216748 GATAAGGAAGGTATTCCCCCAGACCAACAACGTTTGATCTTTGCCGGTAAACAATTGGAA 216807 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | | || |||||||||||||| || || ||| | ||||| || ||| Sbjct 216808 GATGGACGCACCCTTTCGGATTACAACATCCAGAAGGAATCTACTCTCCATTTAGTATTG 216867 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 216868 CGTCTCCGTGGTGG 216881 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || |||||||| || || || ||||| |||||| |||| Sbjct 216976 GATAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTCGCCGGTAAACAACTGGAA 217035 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||| || |||||||||||||| ||| ||| | |||||||| | Sbjct 217036 GATGGTCGTACCTTGTCTGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTA 217095 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | ||||| |||| Sbjct 217096 CGTCTTCGTGGAGGCG 217111 >seq1190 Length=275307 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| ||||| || || || || || || |||| ||||| | Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| | | || |||||| || || ||||||||||| |||| || || Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 186791 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||||| || ||||| || |||||||||||||| || | || | | || |||||||| Sbjct 186792 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAA 186851 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||||||||| ||||| ||||| | ||||| || Sbjct 186852 TATTCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCGTGGTGG 186899 >seq1304 Length=336898 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || || || || ||||||||||| Sbjct 274306 GACAAAGAAGGTATCCCCCCAGATCAACAACGTTTGATCTTCGCTGGTAAACAATTGGAA 274247 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| |||||||||||||| || |||||| |||||||| | Sbjct 274246 GATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTACTC 274187 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 274186 CGTCTTCGTGGTGG 274173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854970593951