Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq964 150 4e-31 seq1304 113 1e-19 seq1348 91.5 3e-13 >seq964 Length=291957 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || || |||||||| ||||||| |||||| | ||||||||||| || Sbjct 216857 TGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCCAATTGT 216798 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | ||||||||||| || |||| |||||||| || |||||||| Sbjct 216797 TTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 216738 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| ||||| || || |||||| || | |||||| || ||||| || Sbjct 216737 GCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTTCCGGTC 216678 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | |||||| Sbjct 216677 AAAGTTTTCACGAAGATCTGCAT 216655 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || | || || |||||||| ||||||||||| || || | | Sbjct 217107 TCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAA 217048 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||| || || || |||||||| | ||||| || || || |||| Sbjct 217047 GGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAAT 216988 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| |||||||| || || ||||| || ||||| || || ||| || || Sbjct 216987 ACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTC 216928 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || || || | || || || || | ||||| Sbjct 216927 CAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||||||||| | | || | |||||||||| ||| Sbjct 215843 GTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATCTTCCAACTG 215784 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || | || ||||| || || |||| ||||| ||||| ||||| || Sbjct 215783 TTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTT 215724 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || || || || ||||||||| | || || || || ||||| Sbjct 215723 AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGTTTTACCCGT 215664 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | ||||| Sbjct 215663 TAATGTTTTAACGAAAATTTGCAT 215640 >seq1304 Length=336898 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | |||||| || ||||||||||| || || | | ||| Sbjct 274178 ACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 274237 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || |||||||| | |||||||| || || || | || Sbjct 274238 GCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACC 274297 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || || || ||||| |||||||| || ||||| || | Sbjct 274298 TTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAA 274357 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||| || || || | |||||| Sbjct 274358 GGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1348 Length=1847788 Score = 91.5 bits (100), Expect = 3e-13 Identities = 242/362 (67%), Gaps = 16/362 (4%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| ||| | |||||||| || | ||||| |||||||||||| || |||| Sbjct 1699158 CCAATGTTTTGCTGGTTGCTTTTGCGGTTGCAA---GCATCTTTGTACAACATATAGGGT 1699214 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| ||||||| | | || | |||||| |||| ||| ||| || Sbjct 1699215 GTACCGGTTTCAACTTGAGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTG 1699274 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 |||||||||||||| || || ||||| | || | || ||||| ||| || | Sbjct 1699275 CGATTGGCTTTTCCTTCTTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAA 1699334 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| | ||||||||| | | || || | || ||| | ||| | ||| | | Sbjct 1699335 ACATCCTGCAGACCGGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCC 1699394 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATC 178384 || |||||||| || | ||| | |||| | |||||||||| ||||||||||| || Sbjct 1699395 ACACGTTTCATAAACAAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCT-AT- 1699452 Query 178385 AGGTCATTTCCT--CCGG--GTTTTC-TGGCATCAACAAAGTCAAAAATGTCCACATGCC 178439 | || ||||| |||| ||||| | ||| | ||| |||||||| || ||||| Sbjct 1699453 -GCTC--TTCCTTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCC 1699509 Query 178440 AA 178441 || Sbjct 1699510 AA 1699511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159126559149245