Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq964 102 7e-17 >seq964 Length=291957 Score = 102 bits (112), Expect = 7e-17 Identities = 173/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||| || | || ||||| |||||||| | || ||||| Sbjct 215655 TAACGAAAATTTG--CATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTT 215598 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||||||||||||||| | | ||| || |||| || | |||||||| ||||| || | Sbjct 215597 TTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAA 215538 Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217 ||| || || || |||||| | | |||||||| ||||| ||| | | | | Sbjct 215537 ACGTTGTTGATCTGGTGGG-ATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAA 215479 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 ||||| | ||| || |||| ||||| |||| || |||| || |||||||||| Sbjct 215478 TAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGA 215419 Query 39278 TTTGCAT 39284 ||||||| Sbjct 215418 TTTGCAT 215412 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG- 39115 |||||| | | |||| ||||||||| || ||| ||| ||||| || || || || | Sbjct 217110 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 217051 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 |||| || || | || || || ||||| || || || || | ||| ||||| || | || Sbjct 217050 CAAG-GTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGG 216992 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | || || ||| |||||| || | || | | |||||| | || | Sbjct 216991 GAATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGA 216932 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| |||| || |||| |||||||| ||||||||||| Sbjct 216931 CTTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536632295969