Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq964 161 7e-35 seq1190 141 6e-29 seq1304 129 4e-25 >seq964 Length=291957 Score = 161 bits (178), Expect = 7e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || | || || ||||| |||||| | |||||||| | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||||| | |||| || ||||||||||| | || |||||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAA-TTCAAGACAAAGAAGGAATCCCACCAGATCA 215530 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| ||||||||| ||||||||| ||||| || ||||| || Sbjct 215531 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 215590 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||| || ||||| ||||| || ||| | ||||| || || Sbjct 215591 TATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | ||||| ||||| || || | || ||||| | || Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | | |||| ||||| | ||||| |||||||||||| | || |||||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGC-TAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 215758 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || || ||||| ||||||| | ||||||||| |||||| || Sbjct 215759 ACAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAA 215818 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || | || || || || | ||||| || || Sbjct 215819 CATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 215866 Score = 134 bits (148), Expect = 9e-27 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || || | || || || || ||||| || || || || | Sbjct 215181 AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCT 215240 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || |||||| | |||| | |||| || || || || ||| | || ||||| Sbjct 215241 TCGGATACGATTGAAAATGTTAAGGCTAAAA-TTCAAGATAAGGAGGGTATTCCCCCAGA 215299 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||| |||| |||||||| |||||| ||||||||| ||||||||| |||||| Sbjct 215300 TCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTA 215359 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || || | || || ||| || | ||||| || || Sbjct 215360 TAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || |||||||| |||||| | |||||||| | | Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || || || |||||| | || ||||| ||| Sbjct 216715 GATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 216774 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACA 23788 || ||||| || |||||||| |||||| ||||||| | |||||| ||| || |||||| Sbjct 216775 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGG--ATTACA 216832 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| || || || || || | |||||||| || Sbjct 216833 ACATCCAGAAGGAATCTACTCTCCATTTAGTATT 216866 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||| | || || ||||| |||||| | ||||| || | | Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| ||||| || || |||||| | || |||||||| Sbjct 216943 GATACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 217002 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || ||||| |||||||||||||| | || || || || |||||| Sbjct 217003 CAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAAC 217062 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| |||||||| | ||||| || || | | || ||||| Sbjct 217063 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGG 217109 >seq1190 Length=275307 Score = 141 bits (156), Expect = 6e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| ||||| || || |||||||| || || || | | Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 186791 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || |||||| ||||||| | || ||| | |||||||| Sbjct 186792 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAA 186851 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| ||||| || || || || || Sbjct 186852 TATTCAAAAAGAATCCACTTTGCACTTGGTATT 186884 >seq1304 Length=336898 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || || || | |||||||| | | Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| |||||||||||| | || ||||||||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || |||||| ||||||| | ||||| || ||| |||||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || ||||| |||||||| || Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGT 274191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002543310204