Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq964 145 2e-29 seq1304 143 6e-29 seq1190 123 6e-23 >seq964 Length=291957 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| ||||||||||| | ||| ||||||| |||||| | || ||| Sbjct 215395 AGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCT 215336 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || || || || || |||||||| || || |||||||| ||||| ||| Sbjct 215335 TCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCT 215276 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| ||| || || || || | ||| || || | ||||| ||| Sbjct 215275 TGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTC 215216 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || ||||| || | ||| | ||||||||| Sbjct 215215 TTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| ||||| || |||| |||||||| | | || | |||||||| | || Sbjct 216857 TGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCCAATTGT 216798 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | ||||||||||| || |||||||||||||| ||||||||||| Sbjct 216797 TTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 216738 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| ||||| || || | ||| || || || ||||| || || || ||| Sbjct 216737 GCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTTCCGGTC 216678 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | ||||| Sbjct 216677 AAAGTTTTCACGAAGATCTGCAT 216655 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||| ||||| || ||||||| ||||| || | ||| || Sbjct 217104 ACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGT 217045 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || |||||||| | ||||| || || || |||||||| Sbjct 217044 ACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACC 216985 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || ||||| || ||| || || ||||| || || | ||| || || || Sbjct 216984 TTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAA 216925 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| ||||| ||||| | ||| | |||||| Sbjct 216924 AGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||||||||| | || ||||||| ||||| | |||||||| | ||| Sbjct 215843 GTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATCTTCCAACTG 215784 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || |||||||| || | || ||||| || || ||||||||||| ||||||||||| || Sbjct 215783 TTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGAT-TT 215725 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| || || || || | ||| || || || || || || || |||| Sbjct 215724 TAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGTTTTACCCG 215665 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| | ||| | |||||| Sbjct 215664 TTAATGTTTTAACGAAAATTTGCAT 215640 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | ||| || | ||| ||||| | || || ||| Sbjct 215608 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 215549 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | |||||||| || || || || ||||| |||||||| || ||| || || Sbjct 215548 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 215490 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | || || || || ||||| || ||||| ||||| || Sbjct 215489 AACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGT 215430 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 215429 CTTAACAAAGATTTGCAT 215412 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||| | |||||||| || || |||||||||||||| || |||||||| ||| ||| Sbjct 216001 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTAACA 215942 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 || || ||||| || | ||| || || || || || || ||||| || |||||||| Sbjct 215941 TTCTCAATAGTGTCGGAAGGTTCAACTTCCAAGGTAATAGTTTTGCCGGTTAAAGTTTTA 215882 Query 225700 ATGAACACTTGCAT 225713 | ||| | |||||| Sbjct 215881 ACGAAAATTTGCAT 215868 >seq1304 Length=336898 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||||||||| ||||||| ||||| |||| ||| || Sbjct 274178 ACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 274237 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||||||||| | |||||||| || || || ||||| Sbjct 274238 GCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACC 274297 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| ||| ||| |||||||| || | || || || || Sbjct 274298 TTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAA 274357 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || |||||||| | ||| | ||||| Sbjct 274358 GGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | ||||||||||||||| | ||||||||| | | ||| Sbjct 186894 ACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGT 186835 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || |||||||| || | |||||||| || || ||||| || Sbjct 186834 ACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCC 186775 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| ||| || ||||| || | || || || | Sbjct 186774 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAG 186715 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| ||||| | ||||| | || | |||||| Sbjct 186714 AGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505026548822