Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq869 187 2e-42 >seq869 Length=1271022 Score = 187 bits (206), Expect = 2e-42 Identities = 482/723 (67%), Gaps = 20/723 (3%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||| || || || |||||||||||||| | ||| | || || || || || Sbjct 484150 ACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCT 484091 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || || | || || | || | ||| | || || ||||| || | || ||||| ||| Sbjct 484090 ATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTG 484031 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA-ACA 4549 || || || | ||| | ||| | || | ||| || | | ||||| ||| ||| Sbjct 484030 ATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA 483971 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATC 4608 |||||||||||||| ||||| || || | || || ||| || || || || || | | Sbjct 483970 -GCAAAATCACAATGTAAACCCTCATCACGTGATA-TCAACTCATTGGAGAATGTAAGAC 483913 Query 4609 CGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATA 4668 | ||||| | ||| | || || |||||||| || | ||||| ||| |||||| | Sbjct 483912 CAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAA 483853 Query 4669 TGCCTTCTACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTGGCTTTGTCTTT 4726 | || ||||| || ||||| || | |||| | ||| || |||| || | Sbjct 483852 TACCCTCTACAGCAGCAAAAGCAA-TAATACGTTCACCAAAATTTGCTGATTTCGAAGA- 483795 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | |||||| | || || |||||| || || || | ||||| || Sbjct 483794 AATCCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATT 483735 Query 4787 AAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 ||| | | | || | |||| | || | ||||||| | || ||||| | ||||| Sbjct 483734 AAAGAGATAATCACGCTGTTCAC---GATCCTTAATATAACTATCAATTAGAATACTATA 483678 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||||||| |||| |||||| || ||||| ||||| || || || || | || ||||| Sbjct 483677 CATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGT 483618 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||||| ||||| | | | || | ||| || | ||||| || || || || || || Sbjct 483617 AACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGC 483558 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTT 5020 || || || || | |||||| || || || | || | ||| | | ||| ||| Sbjct 483557 GGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGG---TGAGTCTTTC 483501 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||||| || |||||||| | ||| |||||||| || |||||||| || ||||| || Sbjct 483500 CCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGC 483441 Query 5081 TTT 5083 || Sbjct 483440 CTT 483438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040684405429