Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq366 150 5e-32 >seq366 Length=2776 Score = 150 bits (166), Expect = 5e-32 Identities = 249/357 (70%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 22502 TTCAAAAAGCGCCTGGTAGCTGAATTCTTCACTATGCGTAGCGC----GCTGGCGAAAAA 22557 ||||| || | || || |||||||||||| ||||| || ||| || ||||| Sbjct 2301 TTCAAGAAAAGACTTGTTTCTGAATTCTTCAAGATGCGATCTGCTTTAGCT-GCCAAAAA 2243 Query 22558 GAAAATGGATCGCAACTCTGCACGCCTGGAGTACAAACCCATGACCGACGCCATCAAACA 22617 | | ||| | || | || | |||| || || || |||||||| || ||||| | Sbjct 2242 G---TTAGATAGAAATACGTCAAGATTGGAATATAAGCCAATGACCGATGCGGTCAAAAA 2186 Query 22618 TGAGCGAGAGGCTCAGGGTAAGCAGATCGCCCCGCATCACTTCAGCAACGAAGCTGACCT 22677 | | |||||| || || ||| || | || || || || || || ||||| ||| | Sbjct 2185 GGCGAGAGAGGAACAAGGCAAGACTATTTCACCTCACCATTTTAGTAATGAAGCAGACTT 2126 Query 22678 GATTAACCGACTGGCGCTGGGAATGACGGCGGCCAAGTTCCGCGTGCATCACGAAATCGG 22737 ||||| || | | ||| || ||||| | || ||||| || || ||| ||||||| || Sbjct 2125 AATTAATCGCATTGTGCTTGGTATGACATCTGCTAAGTTTCGTGTACATAACGAAATAGG 2066 Query 22738 GAAGAAAGAGCCGATCCGCGATTACCTGACGCCGGAACAAATTCACTGCATCACCGAGCT 22797 ||||||||||| ||||| |||||| | || || || ||||| || ||| | || || | Sbjct 2065 AAAGAAAGAGCCTATCCGTGATTACTTAACACCAGAGCAAATACATTGCGTAACTGAATT 2006 Query 22798 ACAGCGCGCCAACACGGTATTCATCAGCATGGGGTGGGACTTCGAACAACGCAAAGA 22854 ||| | |||||||| || || ||| ||||| ||| |||| |||||||| || || Sbjct 2005 ACAAAGAGCCAACACAGTGTTTATCTCAATGGGATGGAACTTTGAACAACGAAAGGA 1949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135613241316280