Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq253 109 6e-19 seq1596 102 9e-17 seq613 82.4 8e-11 >seq253 Length=360942 Score = 109 bits (120), Expect = 6e-19 Identities = 457/711 (64%), Gaps = 29/711 (4%) Strand=Plus/Plus Query 160380 GCAATACGAGGAAGATTCAGTGTTACAACGCCAAGATTATTACGTCCATCAAGAATTTCA 160439 |||||||| || || || || | | || || | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 160440 TTACCAGTCGAATCTTTCCATACGCCCAAGAAACTACGGCAACCCATTGGAG----AAAC 160495 | ||| | |||| | || || ||||| || ||||| |||||||| | |||| Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC 104975 Query 160496 AGGAACAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACAT 160555 || | | | || || | |||| | | ||| | || || || |||||||| Sbjct 104976 --GAGCCCGTTA--CATCGACAACTTTGT----CATAGTTTAAG--ATGTCGGGATACAT 105025 Query 160556 CCTTTTGCTTGCGCACTCTAAAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATA 160615 | |||||| || |||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105026 GCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTG 105085 Query 160616 AAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGTTATCCC 160672 |||||| |||| || || ||||| || | |||||||||| | |||| | | Sbjct 105086 GTGATTAAGGCCTTTTTTAATAGCAAAC---ACTAATTTAGGGAAAACGGCAGTTTTACG 105142 Query 160673 ATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGT 160732 || ||| | || ||||| ||||| ||||| | || || |||| ||| | | Sbjct 105143 ATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TT 105201 Query 160733 CCAGTCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTAA 160791 | | | || || |||||| || ||||| || || || || || || | || Sbjct 105202 CTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTAT 105261 Query 160792 AGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTT 160851 || || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105262 GCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTT 105321 Query 160852 TAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTT 160911 | |||||| |||||| | || ||| || || | | ||||| Sbjct 105322 GGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTT 105381 Query 160912 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGT 160969 || ||||| || | |||||||||| ||| | || ||| || || | || || Sbjct 105382 TTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGT 105439 Query 160970 TCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAAC 161029 || || || || ||| || || || ||||||| || | | ||| || ||| Sbjct 105440 GCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGT 105499 Query 161030 GCCAATTGATTTAGGGGTTTCAATCTGCGCATTACCTAGCTTAAATCCGTT 161080 | |||||||||||| | || || | |||||||| | ||||| || || Sbjct 105500 GGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 9560 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 9619 |||||| | | ||| || ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 9620 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 9668 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 17152 CGCTCTACCAAACTGAGCTACACGAAGTAAATTAAATTTGAGCGGATAATGAGAATCGAA 17211 ||||||||||| |||||||| | | | | || || |||||| | | |||||||| Sbjct 4254 CGCTCTACCAA-CTGAGCTATATCA-GCACATC---TTGGAGCGGGCAGCGGGAATCGAA 4200 Query 17212 CTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 17262 | | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4199 CCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545940309802800