Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq253 113 5e-20 seq1596 98.7 1e-15 seq613 82.4 8e-11 >seq253 Length=360942 Score = 113 bits (124), Expect = 5e-20 Identities = 439/682 (64%), Gaps = 25/682 (4%) Strand=Plus/Plus Query 108317 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACGCTC 108376 ||||| | ||||||||| |||||| |||||| | ||| | |||| | || | Sbjct 104886 ACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---TCTTCGTAGACACCT 104942 Query 108377 AAGAAACTACGGCAACCCATTGGAGAAACAGGAATAGATGAACCAGTGATAGCTTTA--T 108434 ||||| || ||||| |||||||| | || | || || || | | | | | Sbjct 104943 AAGAAGCTGCGGCAGCCCATTGGCGTTT------TAAACGAGCCCGTTACATCGACAACT 104996 Query 108435 TGTTCTTAGCTGAAATAATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCT 108494 | || ||| | || || || |||||||| | |||||| |||||||||| || | || Sbjct 104997 TTGTCATAGTTTAAG--ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACT 105054 Query 108495 GCTTAATATCATAGTTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACA 108551 | || ||||||||||| ||||| | | | |||||| |||| || || ||||| Sbjct 105055 GTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTTAATAGCAAAC- 105113 Query 108552 TAACAAGCTTAGGGAAAATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTT 108611 || | |||||||||| | |||| | | || ||| | || ||||| |||| Sbjct 105114 --ACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTT 105171 Query 108612 TCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAGTCA-GTTCCTGTACCAAATGTAATT 108670 | ||||| | || || |||| ||| | || | | || ||| |||||| || Sbjct 105172 TTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAG 105230 Query 108671 GTTACAAAAGGAGTCTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 108730 ||||| || || || || || || | || || || || ||||| |||||| | | Sbjct 105231 GTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGAT 105290 Query 108731 TGGAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATTTAACGCATCAGCG 108790 ||||| |||||||| |||||||| |||| | |||||| | |||||| | Sbjct 105291 TGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCA 105350 Query 108791 ATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAA 108850 || ||| || || | | ||||||| ||||| || | |||||||||| | Sbjct 105351 ATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCA 105410 Query 108851 AGTACTTTATC--TACATTAGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTG 108908 || | || ||| | | | | | || || || || || || ||| || || | Sbjct 105411 AGGATTTCATCAATGCGGTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAG 105468 Query 108909 CAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCG 108968 | ||||||| || | | ||| || ||| | |||||||||||||| || || | | Sbjct 105469 CGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGG 105528 Query 108969 CATTACCTAGCTTAAATCCGTT 108990 ||||||| | ||||| || || Sbjct 105529 CATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126777 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAG 126836 |||||| | | ||| || ||||||| ||||| || |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 126837 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 126885 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 134513 CGCTCTACCAAACTGAGCTACACGAAGTAAATTAAATTTGAGCGGATAATGAGAATCGAA 134572 ||||||||||| |||||||| | | | | || || |||||| | | |||||||| Sbjct 4254 CGCTCTACCAA-CTGAGCTATATCA-GCACATC---TTGGAGCGGGCAGCGGGAATCGAA 4200 Query 134573 CTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 134623 | | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4199 CCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540638023340440