Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031015.1 Length=26504 Score E Sequences producing significant alignments: (Bits) Value seq1089 98.7 2e-16 >seq1089 Length=16580 Score = 98.7 bits (108), Expect = 2e-16 Identities = 202/293 (69%), Gaps = 13/293 (4%) Strand=Plus/Plus Query 16763 GGTGTATTCTTGATAAAGAAACAGATTAAACCTGAATATCAAAAGAAACTTGAAGATTTC 16822 || || || || ||||| | || || ||||| |||||||| || | || ||||| Sbjct 4051 GGAGTGTTTTTACTAAAGTATCAAATCAAACCAGAATATCAGAACGTTTTACAAAATTTC 4110 Query 16823 TTTAAGTTATATGGTTACAAAAAGAATGAAGTGAAAGTTCCTAATCTTCATACTAGACAA 16882 ||| | |||||||||||| ||| ||| |||||||| || | || ||||||||| Sbjct 4111 TTTTCCATGTATGGTTACAAATCAAATCTAGTAAAAGTTCCAAACTTACACACTAGACAA 4170 Query 16883 AACTGGAATTATGTACAAACA-AAGGATGTTAATATAATTGGTGATTTTAACACG---GA 16938 || ||||| ||||| |||||| ||||||| || || | || || | || || Sbjct 4171 AATTGGAACTATGTGCAAACAGAAGGATG-CAACATTACAGG---TTCAATGGCGGTTGA 4226 Query 16939 AGATTTGAACGAATT--GAAAGCTATATTTGATGGTGGAATTACATTGTGGCATACGAAC 16996 || ||| ||| | |||| || ||| || | ||||| ||||| |||||||| | Sbjct 4227 TAATATGATTGAAATACGAAA--CATCTTTAATAGCGGAATAACATTATGGCATACAGAT 4284 Query 16997 GATGTTGGAAATTATACTTTAAGTAATGAGGTGATATAGATATGTTTAATAAT 17049 ||| |||| |||||| | || |||| ||| |||||| |||| || ||| Sbjct 4285 GATATTGGTAATTATGCCTTGTCGAATGGAGTGTTATAGA-ATGTCAAAAAAT 4336 Score = 93.3 bits (102), Expect = 7e-15 Identities = 245/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 23615 TATTATAACCCTCAACAATTGTTAAGCTATAACAGAATCATGAACTTCACAATTGCTTCT 23674 ||||| |||||| | ||||| | | | ||| | || |||||||| |||| | Sbjct 9796 TATTACAACCCTAATGAATTGCTTTCCAAAAACCGTATTATGAACTTTGTTATTGGCGCA 9855 Query 23675 AGGGGTATAGGTAAAACATATGCAATGAAGAAATATTGTATAAATAGATTCTTAAAAACA 23734 | ||||| ||||||||||||| | || || ||| || || | ||||| |||||| Sbjct 9856 CGTGGTATCGGTAAAACATATGGGTTCAAAAAGTATGTAATTAACCGTTTCTTGAAAACA 9915 Query 23735 GGAGCGCAATTTATTTACTTGAGAATGTATAAAACCGAATTGAAAAAAGTTGACCAACTG 23794 || || ||||| || || ||| || ||| | ||||| ||| || | | |||| Sbjct 9916 GGTAAACAGTTTATCTATTTAAGACGTTACAAATCTGAATTAGCAAAGGTAG-CTAACTT 9974 Query 23795 TTTAATGATGTT-AGTCAGGAATTTCCTGATACTAAATTTGAAACTAAGGGTAAAGA-GT 23852 ||| | | || | || || ||| | | | || ||| ||| | | | || Sbjct 9975 TTTTAACAGTTTGAAACATGAGTTTGAAGGGGTTGACTTC-AAAGTAAAAGGACGTATGT 10033 Query 23853 TTTACATAAATGGCCAGCTAGCCGGGTTTGCTGTTCCGTTGAGTGCATGGCAAAGCTTTA 23912 ||| ||| || | | ||||| || | || |||||||| |||||||| ||| | Sbjct 10034 TTTTCATCAACGATAAACTAGCAGGATGGGCAATTCCGTTGTCCTCATGGCAA-GCTGAA 10092 Query 23913 AAGGTAATTCATTCCCTA-ATGTTGAAACAATTCTGTTTGATGAATTTATTCGTGAAAAG 23971 ||| || ||| || | |||||||||| ||| ||||||| ||||||||||||||||| Sbjct 10093 AAGTCAACGGATTACCCAGATGTTGAAACCATTTTGTTTGACGAATTTATTCGTGAAAAA 10152 Query 23972 GATAAT 23977 |||||| Sbjct 10153 GATAAT 10158 Score = 84.2 bits (92), Expect = 4e-12 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 17504 TCAACTTAAATGCTCAGAAGACACCTGTATTAGTTACAGCAGAGGATTCAAATAAGTTTT 17563 |||| | || || || || ||||| || || || | | || |||| |||||| ||| Sbjct 4764 TCAATCTGAACGCACAAAAAACACCAGTTTTGATTGCTGTCGATGATTTAAATAAACTTT 4823 Query 17564 CCTTGATGAATATTTATAATCAATATGAAGGCAATGCTCCTGTTATTGTTGCCAATAAAC 17623 | || | || ||||| || |||||||||||||||||||||| ||| ||| | ||| Sbjct 4824 CTATGTTAAACATTTACAACCAATATGAAGGCAATGCTCCTGCTATCGTTACATCAAAAG 4883 Query 17624 ACTTTGATCCGAAAACGATT--AGTGTTCATAAAACTGATGCTCCTTATGTTGTTGATAA 17681 | | ||| || | ||| ||| ||| ||||| ||||| || || |||||||| || Sbjct 4884 AAGCTAATCTTGAATCTATTAAAGTATTC--AAAACAGATGCACCGTACGTTGTTGACAA 4941 Query 17682 GATTAAT 17688 || ||| Sbjct 4942 AATCAAT 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84692722495073