Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq87 219 4e-52 seq1596 91.5 2e-13 >seq87 Length=489008 Score = 219 bits (242), Expect = 4e-52 Identities = 486/719 (68%), Gaps = 14/719 (2%) Strand=Plus/Minus Query 142030 AATGGGTATTTAATTGGTTCGTGGTGTTGGTAG--TTAACGATTTTAAAGTCATCTGTGG 142087 |||||||||||||| | ||| ||| ||| || || | || ||| ||||| |||| Sbjct 413658 AATGGGTATTTAATCGCTTCATGGCATTGATAACCTTCAAGAGA--AAAATCATCAGTGG 413601 Query 142088 TAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTTAATAATTAGTTGAGGCT 142147 | |||||||| || | |||||| | | || || | |||||| || ||| | || Sbjct 413600 TTACCCATGTTTCCAGATCTTCTAACGTTTTAATTTGAGGGTTTATCGTTAATGATGGTA 413541 Query 142148 CGTCAAAGGGCTCACGGGAGATCTGTG--TCG-GCACCATAGGTAATTGGTCTTCATAGA 142204 |||| ||||| || | ||| ||| ||| || |||||||||| |||||| | Sbjct 413540 AAGCAAAAGGCTCGCGTTTTAACTGAACATCGCGCATCAGTGGTAATTGGTTTTCATAAA 413481 Query 142205 TATGTGCGTTCACAATCTTATAGAACATTTTACCTGGCTTGTTCCGGGTGATTTGAGCCA 142264 ||||||| |||||||| |||| || ||||| || | | | || || | |||| Sbjct 413480 TATGTGCATTCACAATTTTATGATACGCCTTACCCGGTTGATGACCCGTAATCCGCGCCA 413421 Query 142265 TCAGATGCAGGAATGTATACGCCTGGATTAAATCAAAGTTCAATCCTAATGGAACATCCG 142324 ||| | || || | || | | | ||| |||||||| | ||| ||||| Sbjct 413420 TCAAAGCGAGTAACACGAAACATTGTACTTGGTTAAAATTCAATCCAAGTGGTACATCGC 413361 Query 142325 CCGAACGTTGATAAACGGTCACATGCAAAGTATCATGTACTAAAGAAAAAGTATATGTGT 142384 ||||||||| ||| | |||| ||||||| | | |||||||||| || | Sbjct 413360 AACTACGTTGATAGGAGGTTAAGTGCAGAGTATCACCGAGCAGTGAAAAAGTATGAGTAT 413301 Query 142385 GTACGCATGAACGTAAACATCCTAATTCAATTTCACCAGGGTTCCAGTAAGAAAGAATTT 142444 | | || | ||||| ||||| | ||||| |||||| || || | | | || |||| Sbjct 413300 GCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCTGGATTATAAAACGTAATGATTT 413241 Query 142445 CACCACGATCGTCGATACCCGCTGACAGGTTTTCATAGATTTTACGAAGTTGATCGACTT 142504 || | || || || ||||| | | ||| | | | ||| ||| ||||||| | Sbjct 413240 CAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTAAGCTGATCGAGAT 413181 Query 142505 C---ACCATTAGGACCAACCCAATGTCTGCCCT-GTACACCATAAACCCGGCCCATATCG 142560 ||||| ||| | ||| || ||||| | ||||||||||| || |||||||| Sbjct 413180 GCGTACCATCAGGCCGCTGCCA-TGAGCGCCCTTGGACACCATAAACGCGCCCCATATCA 413122 Query 142561 TCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGGCATTAGCATTC 142620 |||||||||||||| | |||||| || | ||| |||| ||| ||||| ||||| |||||| Sbjct 413121 TCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATTCGCATTTGCATTC 413062 Query 142621 CAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCA-GACGACAGACCACGAATATAACC 142679 || ||||| || | | | ||||| | |||||| | | | ||| || | ||||| Sbjct 413061 CATGTATTACAGCCGATTTCACGGAATTGAGCTGCATTATCATA-ACCGCGTAGGTAACC 413003 Query 142680 CAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGTGTCTAATGGACATT 142738 ||| || || || || | ||||| ||||||||||| || |||||| ||||||| ||| Sbjct 413002 CAGTAGCTCTGCTATTGCGGCTTTGTAAAAACTTTTTCGGGTGGTGATTAATGGAAATT 412944 >seq1596 Length=248270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 52720 GTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAACA 52779 || || ||||||| ||| || || |||| |||||||| ||||| |||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 52780 GCATAACCAGAAACACGGATAGTCAACTGTGGGTA 52814 |||||||| || ||||||||||||| ||||| || Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522104020208280