Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq253 114 1e-20 seq1596 111 2e-19 seq613 87.8 2e-12 >seq253 Length=360942 Score = 114 bits (126), Expect = 1e-20 Identities = 358/546 (66%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 41497 ATGTCAGGATACATTCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTC 41556 ||||| |||||||| | |||||| || ||||||| || | |||||| ||||||||||| Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 41557 GGATCGTTTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGAAAA 41613 ||||| | | |||||| |||| || || ||||| || | ||||| ||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTTTTTTAATAGCAAAC---ACTAATTTAGGGAAA 105128 Query 41614 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 41673 | | |||| | | || ||| | || ||||| ||||| ||||| | || || Sbjct 105129 ACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGG 105188 Query 41674 ATCATTCGTTCAGTCCAGTCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 41732 |||| ||| | || | | || || |||||| || ||||| || || ||||| Sbjct 105189 ATCAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTG 105247 Query 41733 CCCGTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 41792 || || | || || || || ||||| |||||| | |||||| |||||||| || Sbjct 105248 ACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-AC 105306 Query 41793 A-TCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG 41851 | |||||||| |||| | |||||| |||||| | || ||| || | Sbjct 105307 ATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCG 105366 Query 41852 CATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATC--TAC 41909 | | | ||||||| ||||| || | |||||||||| ||| | || ||| | | Sbjct 105367 CTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATGC 105426 Query 41910 ATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCAT 41969 | | | || || || || || |||| ||| || || || ||||||| || | Sbjct 105427 GGTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGT 105484 Query 41970 AATTGCGGTAGCAACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAA 42029 | |||||| ||| |||||||||||||| || || | |||||||| | ||||| Sbjct 105485 CACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAA 105544 Query 42030 TCCGTT 42035 || || Sbjct 105545 CCCATT 105550 >seq1596 Length=248270 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60708 ATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60767 |||||| | | ||||||| ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 60768 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 60816 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 69864 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 69923 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 69924 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 69975 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546381900347040