Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1348 715 0.0 seq869 269 4e-67 seq1394 98.7 1e-15 >seq1348 Length=1847788 Score = 715 bits (792), Expect = 0.0 Identities = 1535/2268 (68%), Gaps = 26/2268 (1%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | ||||| ||||| | | | || |||||||| | | ||| ||||| || Sbjct 1698159 TTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCG 1698218 Query 76833 GTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGG 76891 || |||| | || || | ||| | |||||||| ||| |||| |||| ||| | || Sbjct 1698219 GTCTTTA-AGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGG 1698277 Query 76892 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 ||||| | ||| ||||| | ||| ||||||||||| |||||||| || | || || || Sbjct 1698278 CTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGC 1698337 Query 76952 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 77011 ||||| ||| ||||||| | ||| ||||||| |||||| | | | |||| Sbjct 1698338 CATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATG 1698397 Query 77012 ATCTGGAAGGT-TTGTATT--TTGAATGGAACCACCATCTGATATAATTGTATTCTTTAT 77068 | || | | || ||| ||| ||||| || | || || |||||| |||| || || Sbjct 1698398 TTTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCAT 1698457 Query 77069 ATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTG 77128 ||||||| ||| || | || |||||| || |||| | |||| |||| || | | Sbjct 1698458 TTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATT 1698517 Query 77129 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 77188 |||||||| ||||| || | | ||||||||||||| ||| || ||||| | ||||| Sbjct 1698518 GAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTC 1698577 Query 77189 ATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATT 77248 |||||| || | |||||| || || ||||| || ||||| || || | | ||| ||| Sbjct 1698578 ATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATT 1698637 Query 77249 TCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGG 77308 | | ||||||| |||||||| || || | | | ||| | ||| | |||| || Sbjct 1698638 GCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGG 1698697 Query 77309 TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGT 77368 | || ||| | ||| |||||||| || || ||||| | | || ||| || Sbjct 1698698 TGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGT 1698757 Query 77369 TTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAAT 77428 |||||| | || ||| |||| || | ||||||||| |||||||| || || |||||||| Sbjct 1698758 TTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAAT 1698817 Query 77429 TGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAA 77488 ||||||||||||| | ||| | ||| | ||| ||| | || ||| | | Sbjct 1698818 AGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCAT 1698877 Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 | ||| || | ||| || || |||||||| || ||||||||||| | ||| | | ||| Sbjct 1698878 TAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATT 1698937 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 ||| || ||||||| || | |||||| | || ||||| || ||||| |||||||| | Sbjct 1698938 GGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTT 1698997 Query 77609 AACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTCCATCTA---TA 77663 || ||||| || | || | ||| |||||||| |||| ||| | Sbjct 1698998 GGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTT--TCTGGCGTG 1699055 Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA 77723 |||||||| || | || || || || | ||||||||| |||| ||||| || | | | Sbjct 1699056 ACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAA 1699115 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 |||| || ||||| || |||| || || || || || ||||| | ||||| |||||| Sbjct 1699116 TATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTG 1699175 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 || || ||||| | || || || | ||| | || || |||||||||| || | | Sbjct 1699176 CTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCT 1699235 Query 77844 TCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATA-GATTTGTATCGCCTCTCTC 77901 || || |||| ||| | || || |||||| | | |||| | | ||| ||| Sbjct 1699236 TCAATTATAGCAAACCAAA-GAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCT-TCTT 1699293 Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||| | ||||| | ||| || || || ||||||||||| | || || || | Sbjct 1699294 TTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGAC 1699353 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 ||| | ||| ||||| | ||||||||||||| ||| | || ||||||||||| | | Sbjct 1699354 ATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGT 1699413 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | |||||||| |||||| || ||||||| || |||||| ||||| || || ||||| | Sbjct 1699414 CGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTT 1699473 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 | || | ||| | ||| || | |||||| |||||||| || || | ||| || || | Sbjct 1699474 TCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGG 1699533 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | ||||| ||||| ||| |||||||| | ||| | ||| || ||| | || || | Sbjct 1699534 CACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGA 1699593 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 |||||| | | ||| || || || || ||||| || ||| || | || |||| || Sbjct 1699594 GCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCC-CTTG-GC 1699651 Query 78262 GAATAT-TACT-AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 ||| | | | | ||| || || || || ||| || ||||| | || || | Sbjct 1699652 CCTTATGCAGTGTACGTTTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTG 1699711 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGC 78378 || || || | | | |||||||| ||| || ||| ||| || || ||| ||||| Sbjct 1699712 TTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAG-AAACACG 1699770 Query 78379 TAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACC 78438 |||| || | | || | || || ||||| || || ||||| ||||| Sbjct 1699771 ACGACAACTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAAT 1699830 Query 78439 ATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTC 78498 | ||||| | | ||| || ||||||||||| || || || || | ||| || | Sbjct 1699831 AACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATAC 1699890 Query 78499 CTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCA 78558 ||| ||||| | ||| ||||||||||| ||||| ||||| ||||| ||| ||||| | Sbjct 1699891 CTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTA 1699950 Query 78559 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGT 78618 ||| || ||| | |||| ||||| || || || |||||||| |||||| | || | Sbjct 1699951 GCAAATAAGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCAT 1700010 Query 78619 AAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGT-T 78677 ||||||| ||||| | ||| | ||| || | || | | ||| | Sbjct 1700011 AAATAATTGACGAATTCAAACGTTCTGCATTTTTCTGCACTACAT-TGTAATGGTATTCG 1700069 Query 78678 GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATT 78737 ||||| | || ||| || || | | ||||||| | | | | | ||| || Sbjct 1700070 GAAATCAATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATA 1700129 Query 78738 ACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCT 78797 || || |||| |||||| ||||| ||||| | ||| || ||||| || | || || Sbjct 1700130 ACCTCTGAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCC 1700189 Query 78798 AGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATA 78857 | || |||||||| ||| | |||||| | || ||||| | |||||||| ||| | Sbjct 1700190 AATATGGCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTG 1700249 Query 78858 TCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTTTG 78917 || | ||| || || || ||| || || || | ||| || |||| | || Sbjct 1700250 TCCAGTTCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCC 1700309 Query 78918 ACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATGTGATT 78977 || ||||| ||||| || ||||||| |||||||||| ||| || || ||||| ||| Sbjct 1700310 ACTGGATCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATT 1700369 Query 78978 TTATC-AAATATAACATTCTCCTTGCATCCATTTCGTTTAATAACGAA 79024 ||||| |||| | || | ||||||| ||||| |||||||| ||| || Sbjct 1700370 TTATCGAAATGT-ACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAA 1700416 >seq869 Length=1271022 Score = 269 bits (298), Expect = 4e-67 Identities = 492/711 (69%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || |||||||||||| ||| | || ||||||||| ||||| | || || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 || | ||| || ||||| || || ||||| || | || || || || || | || Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAA-ACATGCAAAATC 48151 | | | || ||| || | | | |||||||||||||||||| ||| |||||||| Sbjct 484019 AATTCTCTCTCG--ACTGGGACGTTGTACCAAATGTTTAAACATTAATACA-GCAAAATC 483963 Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211 |||||| | ||| ||||| | || || || || || ||||| ||||| ||||| || Sbjct 483962 ACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCATAAG 483903 Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 |||||||| || |||||||| || | || ||| ||| |||||| || || ||||| Sbjct 483902 ACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTCTAC 483843 Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAA----CTGGCTTCGTTGTGTATCCA--CCG 48325 || ||||| || ||| | || || || ||| |||| | ||||| || Sbjct 483842 AGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAG-AAATCCAAGCCA 483784 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | ||||||||| ||||| ||| ||| ||||| ||||| ||||||||||||||| | Sbjct 483783 T--TGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATA 483726 Query 48386 Gt---ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | | |||| | ||| |||| ||| |||| |||| || |||||||||||| || Sbjct 483725 ATCACGCTGTTCA---CGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGA 483669 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 ||| | |||||| || || || ||||| || || ||||| | || ||||| | ||||| Sbjct 483668 GTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTAC 483609 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | | || ||||| | | ||| ||||| || || ||||| ||| || || || Sbjct 483608 TTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAA 483549 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | |||||| ||| |||| || ||| || ||| | | |||||| | | Sbjct 483548 AGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTT 483489 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 |||||| || | |||||||||||| | |||||||| || || || || || Sbjct 483488 ATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGCCTT 483438 >seq1394 Length=309634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 43234 CCAATATACTTCAAAAATTTGAGTGAGATCAACTGCCAAATTAGTATTATTGAAGATGGC 43293 ||||||| ||||||| |||| | | ||| ||||| | | | ||| | |||| Sbjct 287822 CCAATATTCTTCAAATATTTTGCTTAAATCTCGCGCCAATGTGGGACAATTCA---TGGC 287878 Query 43294 ---AATTCCCAATTCCTTGACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAA 43350 ||| || ||||| || ||||| |||| ||||| ||| ||||| || ||||| || || Sbjct 287879 TAAAATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAA 287938 Query 43351 ATAAATATGTCTATTATCTGATATCCAAAATTTAGTATGAAGAACTCCACC 43401 |||||||||| | || || || ||||| ||||| ||||| | ||| ||||| Sbjct 287939 ATAAATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 42683 GTATCGGTAAAGTAATTTCCTGTCCAATTTGATGTGCCTATATACGCCGTTTTATCGGTT 42742 ||||||||||| |||| || | |||||| ||||| || |||||||| || ||||| ||| Sbjct 287253 GTATCGGTAAAATAATCACCCGACCAATTGGATGTACCAATATACGCTGTATTATCAGTT 287312 Query 42743 ACCATATATTTTGCGTGATTTACTCGGGAATACGGAAT 42780 ||||||||||| ||||| || ||| ||| ||||| Sbjct 287313 ACCATATATTTATTATGATTGACACGGCCATAAGGAAT 287350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653925404320