Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq253 127 1e-24 >seq253 Length=360942 Score = 127 bits (140), Expect = 1e-24 Identities = 428/657 (65%), Gaps = 16/657 (2%) Strand=Plus/Minus Query 22366 TAACTGT-TGCTTAGTAGACCTAGGCGGTATGTTGAAAAATGGCACTAAAATTGGTAATG 22424 ||||||| |||| | | || || | || ||||| | ||||| |||||| ||||||| Sbjct 105587 TAACTGTATGCTGATT-GATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATG 105529 Query 22425 CGAATATTGAAACTCCTAAATCCATAACTACTGCGTGTGCGATTACTGCTCAGATTATTG 22484 | | || || |||||||||| || | ||||| || | || || || ||||| | Sbjct 105528 CCGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCG 105469 Query 22485 CTCAAGTATCAGGCGCTCAGTATGGTGGTACTTCCATTGATCGTATTGATGAAGTTCTAG 22544 |||||||| | || | |||||||| || |||| | || ||||||||| | || | Sbjct 105468 CTCAAGTAGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTG 105409 Query 22545 CTCCGTATGTTAGGAAGTCCTACAATAAACATCTGGGGCGTGGCCTACGTTGGCTTAAGG 22604 |||| ||||| | ||| | |||||||| | | |||| | | Sbjct 105408 CTCCTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAATTGGGGCATTG 105349 Query 22605 ATGA-GAGAAAAGCTGCTGTATATGCTACTGAACTTACTGAAAAAGAATGTTATGATGCA 22663 | || | |||| ||| ||||| | | || |||||||||||||| ||||| Sbjct 105348 AAGATGCGAAAGGCT-------ATGCTGATAGCCAAACCGAAAAAGAATGTTACGATGCC 105296 Query 22664 TTCCAGGCCCTAGAGTATGAGACTAATTCGTTATTTAACTCTAATGGGCAGACTCCTTTT 22723 ||||| |||| || || || || | | || | | ||||| || || || || Sbjct 105295 TTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTC 105236 Query 22724 GTTACTCTGGGCTTTGGTTTAGG-ACAA-GAATGGGAAGAAAGGATGATTCAGAAAGCTA 22781 || || | || ||||||||||| ||| | | | ||| | | |||| || || | | Sbjct 105235 GTAACCTTTGGGTTTGGTTTAGGCACATCGCAAG--AAGCACGCTTGATCCAACAATCCA 105178 Query 22782 TTCTTCAAAATCGTCTTAAAGGACTAGGGGCAGCAGGGTCGACACCTATCTTTCCTAAAT 22841 |||| |||| ||| | || |||| | | || | | || ||||||| Sbjct 105177 TTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAAT 105118 Query 22842 TGATATTTTCAGTTAAGGAGGGG-TTAAACAAAAATCCTGGTGATCCTAATTATGATATA 22900 | | ||| | |||| | || |||| || ||| |||||||||||| |||||||| Sbjct 105117 TAGTGTTTGCTATTAAAAAAGGCCTTAATCACCAATA-TGGTGATCCTAACTATGATATC 105059 Query 22901 AAACAGCTAGCACTAGAATGTTCTGCTACACGTATGTACCCAGACTATTTAAGCTATGAG 22960 |||||| ||||| |||| ||| | | ||| ||||| || ||| |||| |||||| Sbjct 105058 AAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGAC 104999 Query 22961 AAGGTTGTAGCTGTTACTGGCGATTTTAAAGCCCCTATGGGTTGTCGTAGTTTTTTA 23017 || ||||| | ||| || ||| |||||| | || ||||| || || || || ||| Sbjct 104998 AAAGTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTA 104942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356107765316198