Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031062.1 Length=75147 Score E Sequences producing significant alignments: (Bits) Value seq410 170 9e-38 >seq410 Length=72445 Score = 170 bits (188), Expect = 9e-38 Identities = 485/730 (66%), Gaps = 29/730 (4%) Strand=Plus/Minus Query 72127 AAACGCATTTTGTTGTCCGGTGACTTCGATACCGACAGCTTGTGGTTTGTACTGCTGGCA 72186 |||| || |||| || || || ||||| | ||| |||| ||||| || || || Sbjct 22777 AAAC-CACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTGAAC 22719 Query 72187 CAGTCTGAACAGGTCATTAATATTCTTGTCCATAGTCTGGCGTTTAACAA-TGCCATCGA 72245 ||||||||| | ||||||| || |||||| ||| | | | ||| | ||||| | Sbjct 22718 CAGTCTGAATAAATCATTAAGGTTAGCGTCCATC-TCTTGTTTCTTGCAAATACCATCTA 22660 Query 72246 CCAAGAACCAGTCACCATTGGAGTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTG 72305 ||||| |||| | ||| | ||| | | |||| |||| || || |||||| || Sbjct 22659 CCAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAGCAC 22600 Query 72306 TCTGTTTGGCTGAGGTGGCAAAGTCAGTGGTGATATAGAAGTTGAATGTCTG---CTGAT 72362 ||| ||| | ||| |||||||| ||||| || || | | | |||| ||| Sbjct 22599 TCTCTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAACTGTG 22540 Query 72363 TCTCGA---TTAACAGTGACCGGTCATACCAACGCATATCC--GAATCCTGAACCAGACG 72417 || || || | || || |||| ||||| || || |||| || | Sbjct 22539 TCATGAGATTTGTACGAGA---GTAATACTG-----TATCCATGACTCTTGAATCATTCT 22488 Query 72418 TTCTTCTTCAGAGGTAATGCGCAGCATCAGCTCTTGCATGAAGCCAGATACCTTACCT-G 72476 ||||| ||||||| ||| || | ||| || ||||| | || | || | || | Sbjct 22487 CTCTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATG-ATTTAATTCGCCCAG 22429 Query 72477 TCTTGACTGCCATTTCCCACTGAGCT-TCGATGTACTCATAAGGGAAACGGTCTTCCCAT 72535 | | || |||| || |||| ||| | | | ||||| | ||| || || |||| Sbjct 22428 TTCTCACAGCCAACTCATACTG-GCTCTTAACAAATTCATACGAGAATCGCTCAGGCCAT 22370 Query 72536 GCACCGACAAACTCTTCACGG-CT--ACAAGGCCAGCGTTCACAAACAGGCCACACGTTC 72592 ||||| ||||| |||| | || |||||| |||| ||||| | ||| | ||||| Sbjct 22369 GCACCAACAAA---TTCATGTTCTTCACAAGGGAAGCGCTCACAGATAGGGTAAACGTTA 22313 Query 72593 ACATCCCATGCACCTGACTCAACGGCTTCAATAAGAATGTCGTCTTTGTTAAATGGCGTA 72652 || | ||| | |||||||||||||| ||| |||| || | || ||||| |||||| Sbjct 22312 ACGTACCAACCGCCTGACTCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTA 22253 Query 72653 CCATTGAAGATTACCTTTCTCTTCGTTGGATCCATTGCGTGGTTCACACCTTTATATACG 72712 ||||| |||| | |||| |||| ||||| || | || |||| ||||| ||||| || Sbjct 22252 CCATTAAAGACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACA 22193 Query 72713 GTGTCCTTAATGGCTTCCATTGAGACACGGGATTTGGAGTCATCATCTGATACCAAGTCA 72772 ||||||||||| ||||||||| || || | || || || || |||||| Sbjct 22192 GTGTCCTTAATCGCTTCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCA 22133 Query 72773 TCCAGCACACAGAGCACAGGACGCTTACCAAAAATCTTCGTACCACGAAGACCTGTCTTG 72832 || || ||| || ||||||||||||| | || || ||||||| | ||||||||| Sbjct 22132 TCAAGTACAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTA 22073 Query 72833 GCACCGAACA 72842 ||||| |||| Sbjct 22072 GCACCAAACA 22063 Score = 167 bits (184), Expect = 1e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 30962 GATGGTTGGCATTATCTGTTCGGTAACTTCAACCTCGGTGGAACGTTATCCGGGCGGTTA 31021 ||||| |||||||| ||||||| | |||||| | |||||||| || || | || Sbjct 62017 GATGGATGGCATTACTTGTTCGGATATTTCAACTTAGGTGGAACCAAGTCTGGTAGATTG 61958 Query 31022 AGCTCATCCGATCCAAACCTGCAAAACCTACCAGCGAAAGAGAATAAATACTCCAAGCTG 31081 || ||||| | || ||| | |||||| | ||| | | | | ||| || | Sbjct 61957 AGTTCATCTAACCCGAACTTACAAAACATCCCATCAAGCCGTAGTCCGTACAGTAAAGTA 61898 Query 31082 ATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGTGGTCTGGACTTTGCAAGT 31141 ||||| |||||| ||| || || ||| |||| ||| || ||||||| ||| Sbjct 61897 ATCAAACGTTGCTTTAGAGCACCGAAAGGCTGGCTGTTTACTGGACTAGACTTTGATAGT 61838 Query 31142 CTGGAAGACAGGATCTCTGCTGTTACCACTAAAGACCCAAATAAACTGAAGGTGTATACC 31201 || |||||||| || || ||| | |||||||||||||| |||||||| ||||||||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 31202 GATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTTGGTGAGCAGATGCCAGAC 31261 ||||||||||| || |||||| | ||||||| |||||| || | |||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 31262 ATTGTGGATACTGTAGA 31278 ||||| || |||||||| Sbjct 61717 ATTGTTGAAACTGTAGA 61701 Score = 149 bits (164), Expect = 3e-31 Identities = 279/408 (68%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 60948 CTTCACCAGTGATTTCATCATCGGCAGTTGCAGCACCTGCATACAGAACAGTACCAGCAG 61007 |||||||||||||||||||||| ||| |||| ||| ||| | |||||||||| Sbjct 34705 CTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAACATGATAGTACCAGCAC 34646 Query 61008 CAGCCAGCAGGTCTTTTTGCAGAACAGCTTCGGTCATCTGTACAGCACCGTTCATCAGCT 61067 | | || || ||| || | |||| || || ||||| ||||| | | ||| | Sbjct 34645 CTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTACCGCACCTGTTACCAGTT 34586 Query 61068 CGGTAGACAGGTGATCCATCAGGCCATCA--TCAGAGTCGAAGTCCATAGACTCTTGAGT 61125 | || || | |||||| |||| |||| || ||||| ||||| |||| ||| Sbjct 34585 CACGCTGCATATGTTTCATCAG--CATCGGGTCAGTATCAAAGTCGATAGAGTCTTTAGT 34528 Query 61126 GAACTCATGGAAGAAACCGAACTTGTGAATTGAGCCTTCACGTTCCAGACGGGTGAAGCC 61185 ||||| |||||| ||| | || ||| || |||| |||||||||| || Sbjct 34527 CCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATTTCCAGACGGACAGTACC 34468 Query 61186 AACACGGTTAACACGACCACCATTTTCGGTCAGCAGTGGCAGCTTGTTGGTGATAGTACC 61245 ||||||||||||||||||||| | ||| || |||| || | ||| |||| Sbjct 34467 AACACGGTTAACACGACCACCTTCTTCACCCATGTACGGCATTTTATCAAGGATTTTACC 34408 Query 61246 AATGTCTTTACTGGAGCCATACAGGTTCCCATTAGCAATGGTCACACCAGAAGCATCGAT 61305 || ||||||| || || || | ||| |||| || | || |||||||||||||| Sbjct 34407 AACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTTAACGCCAGAAGCATCGAT 34348 Query 61306 GCCCTGATCGTTAATGTTACGGTCGTCCAGCAGTGGTACGTATTCGTA 61353 || || ||||| | ||||||||| ||||||| ||| | ||| | ||| Sbjct 34347 ACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAATGTAGTGGTA 34300 Score = 111 bits (122), Expect = 8e-20 Identities = 178/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 36130 ATGGCTGACCACGAAGAAATTCGTAAAGCTGAAATGTCTCACCGTTACTTCAAAGCTCTG 36189 ||| | || || |||||||| ||||| |||||| | || ||||||||||| || | Sbjct 56382 ATGACGGAGCATGAAGAAATCTTAAAAGCAGAAATGGCCCATCGTTACTTCAAGACTATT 56323 Query 36190 AAGTTAGCCGGGGCTTATGCCTTTGTTGATGAAAGCAA--TGAAGTGGAAATGTCCCATC 36247 || ||||| || ||||| || ||| ||| | || || |||||| | ||| ||| Sbjct 56322 AAATTAGCAGGTGCTTACGCATTTATTG--CACAGGAACCAGAAGTGAAGATGGAGCATT 56265 Query 36248 TGCTATCTGCAATTCTGCTGGTAGAGGAATCTGGTGCAGC-CTTCCAGAAGATCCTCACT 36306 ||| ||||| ||| ||| || || ||||| |||| ||| ||| || | ||| | | | Sbjct 56264 TGCATTCTGCTATTGCGCTTGTGGAAGAATCAGGTGAAGCGCTTAAAGCA-ATCATGAAT 56206 Query 36307 CGTGAGAAAGCCTACATGAAGTTAGCCAAGTATATCGCTGCTGTTGATGGCGATGTAACT 36366 ||||| ||| | ||| ||||||||| |||| | | || | |||| | ||||| ||| Sbjct 56205 CGTGATAAACCTTACGAGAAGTTAGCGAAGTTTGTTGCAACAGTTGGCCGTGATGTTACT 56146 Query 36367 CATGCTGACTT 36377 | |||||||| Sbjct 56145 AACGCTGACTT 56135 Score = 84.2 bits (92), Expect = 1e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 30197 AACTGGGATGATACAAAGCTGATCACTTATCTGGCGACGAATTCGTGTGCCGGAAACAAG 30256 || ||||||||||| || | ||||| ||| | ||||| || ||| | |||| | Sbjct 62746 AATTGGGATGATACTAAAATCATCACATATTTAGCGACCAACAACTGTTCACAAAACCAT 62687 Query 30257 TTAGGCTTGAAAGACCAATCACAGGAATTTGCGGGTAACTATGCTGAGGAAGGTATCAAG 30316 ||||| || |||| | ||||| || ||||| ||||||||||||| |||| |||||| Sbjct 62686 TTAGGTTTAAAAGCTAACTCACACGAGTTTGCAGGTAACTATGCTGTAGAAGATATCAAT 62627 Query 30317 GATATC--TGTAATATCCCTCTGGATCAGCTGCTGCAATATAACCTC 30361 |||||| | ||||| |||| | || | || |||||||| || Sbjct 62626 GATATCAATCTAATA--CCTCCTAAAGAGTTATTGGAATATAACGTC 62582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240340582259844