Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq253 129 6e-25 seq1596 95.1 1e-14 seq613 87.8 2e-12 >seq253 Length=360942 Score = 129 bits (142), Expect = 6e-25 Identities = 447/683 (65%), Gaps = 27/683 (4%) Strand=Plus/Plus Query 43716 ACACCAAGATTATTACGTCCATCAAGAATTTCATTGCCAGTCGAATCTTTCCATACGCTC 43775 ||||| | ||||||||| |||||| |||||| | |||| | |||| | || | Sbjct 104886 ACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---TCTTCGTAGACACCT 104942 Query 43776 AAGAAACTACGGCAACCCATTGGAG----AAACAGGAACAGATGAACCAGTGATAGCTTT 43831 ||||| || ||||| |||||||| | |||| || | | | || || | |||| Sbjct 104943 AAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC--GAGCCCGTTA--CATCGACAACTTT 104998 Query 43832 ATTGTTCTTAGCTGAAATAATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAG 43891 | | ||| | || || || |||||||| | |||||| |||||||||| || | Sbjct 104999 GT----CATAGTTTAAG--ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAA 105052 Query 43892 CTGCTTAATATCATAGTTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACAT 43951 ||| || ||||||||||| ||||| | | | |||||| |||| || || | || Sbjct 105053 CTGTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTTAA-TAGCAA 105111 Query 43952 A-ACAAGCTTAGGGAAAATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTT 44010 | || | |||||||||| | |||| | | || ||| | || ||||| |||| Sbjct 105112 ACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTT 105171 Query 44011 TCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAGTCA-GTTCCTGTACCAAATGTAATT 44069 | ||||| | || || |||| ||| | || | | || ||| |||||| || Sbjct 105172 TTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAG 105230 Query 44070 GTTACAAAAGGTGTTTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 44129 ||||| || || ||||| || || | || || || || ||||| |||||| | | Sbjct 105231 GTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGAT 105290 Query 44130 TGGAATGCATCGTATACA-TCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGC 44188 ||||| |||||||| ||| |||||||| |||| | |||||| |||||| | Sbjct 105291 TGGAAGGCATCGTA-ACATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTC 105349 Query 44189 GATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGA 44248 || ||| || || | | ||||||| ||||| || | |||||||||| Sbjct 105350 AATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGC 105409 Query 44249 AAGTACTTTATCTACATTCG--CAAAAGTCGTTCCGCCATATTGATGGGAAGCAACTTGC 44306 ||| | || ||| || || | || || || ||||| |||| ||| ||||| Sbjct 105410 AAGGATTTCATC--AATGCGGTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGA 105467 Query 44307 GCAGTAATTTGTGCCATAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGT 44366 || ||||||| || | | ||| || ||| ||||||||||||| || || | Sbjct 105468 GCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCG 105527 Query 44367 GCATTACCAAGCTTAAATCCGTT 44389 |||||||| | ||||| || || Sbjct 105528 GCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 62758 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62817 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 62818 GCATATCCGGATACACGGATGGTCAGCTGCGGATA 62852 ||||| || ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 71040 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 71099 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 71100 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 71151 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533089384979120