Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq1596 95.1 1e-14 seq253 84.2 2e-11 >seq1596 Length=248270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 142613 TATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCG 142672 ||||| || |||| ||||||||||| |||||||| || || ||||||||||||||| Sbjct 48828 TATCCACAACTGACTATCCGTGTATCGGGTTATGCGGTGCGTTTTAACTCTCTGACTAAA 48887 Query 142673 GAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707 |||||||||| |||||||| ||||||| || || Sbjct 48888 GAACAGCAGCAAGACGTTATTACTCGTACTTTCAC 48922 >seq253 Length=360942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 267/405 (66%), Gaps = 17/405 (4%) Strand=Plus/Minus Query 159435 GAAGTAAATACACTTTTCAGCTCTAATGGACAAACGCCTTTTGTAACAATTACATTTGGT 159494 ||||| || ||||| | | | ||||| ||||| || || ||||| || |||||| Sbjct 105277 GAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGT 105218 Query 159495 ACAGGAAC-TGACTGGACTGAACGAATGATTCAGAAAGCAATTCTGAAAAATCGTATTAA 159553 ||| || | | || | ||| |||| || || | ||||| ||||| ||||| Sbjct 105217 TTAGGCACATCGCAAGAA-GCACGCTTGATCCAACAATCCATTCTAAAAAACCGTATCGC 105159 Query 159554 AGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGT-TATGTTCGTTGAAG 159612 || | ||| || | | |||| | |||||||||| | || | || | || || Sbjct 105158 TGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTAGTGTTTGCTA-TTAAAA 105100 Query 159613 AAGGTGTTAATCTTTATAAAGACGATCCGAACTATGATATTAAACAGCTTGCTTTAGAGT 159672 |||| |||||| | | | ||||| ||||||||||| |||||| | || ||||||| Sbjct 105099 AAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCAAACAGTTAGCATTAGAGT 105040 Query 159673 GCGCAAGCAAAAGAATGTATCCTGATATTATTTCAGCTAAGAACAA--TAAAGCTATCAC 159730 | || |||||| | |||||||| || || || | ||| || || | | | | || Sbjct 105039 GTGCGAGCAAACGCATGTATCCCGACAT--CTTAAACTATGACAAAGTTGTCGATGTAAC 104982 Query 159731 CGGTTCATCTGTTCCTGTTTCTCCAATGGGTTGCCGTAGTTTCTTGAGCGTATGGAAAGA 159790 || || ||| | | |||||||| ||||| || ||||| | || | |||| Sbjct 104981 GGGCTC----GTT--TAAAACGCCAATGGGCTGCCGCAGCTTCTTAGGTGTCTACGAAGA 104928 Query 159791 TTCGACTGGTAATGAAATTCTTGATGGACGTAATAATCTTGGTGT 159835 | ||| | |||||| |||||| ||||||||| | ||||| Sbjct 104927 ---AAATGGCCAACAAATTCATGATGGCCGTAATAATTTAGGTGT 104886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542647580309880