Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq253 122 9e-23 seq1596 98.7 1e-15 seq613 87.8 2e-12 >seq253 Length=360942 Score = 122 bits (134), Expect = 9e-23 Identities = 443/682 (65%), Gaps = 25/682 (4%) Strand=Plus/Plus Query 41717 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACGCTC 41776 ||||| | ||||||||| |||||| |||||| | ||| | |||| | || | Sbjct 104886 ACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---TCTTCGTAGACACCT 104942 Query 41777 AAGAAACTACGGCAACCCATTGGAG----AAACAGGAACAGATGAACCAGTGATAGCTTT 41832 ||||| || ||||| |||||||| | |||| || | | | || || | |||| Sbjct 104943 AAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC--GAGCCCGTTA--CATCGACAACTTT 104998 Query 41833 ATTGTTCTTAGCTGAAATAATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAG 41892 | | ||| | || || || |||||||| | |||||| |||||||||| || | Sbjct 104999 GT----CATAGTTTAAG--ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAA 105052 Query 41893 CTGTTTAATATCATAGTTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACAT 41952 |||||| ||||||||||| ||||| | | | |||||| |||| || || | || Sbjct 105053 CTGTTTGATATCATAGTTAGGATCACCATATTGGTGATTAAGGCCTTTTTTAA-TAGCAA 105111 Query 41953 A-ACAAGCTTAGGGAAAATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTT 42011 | || | |||||||||| | |||| | | || ||| | || ||||| |||| Sbjct 105112 ACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTT 105171 Query 42012 TCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAGTCA-GTTCCTGTACCAAATGTAATT 42070 | ||||| | || || |||| ||| | || | | || ||| |||||| || Sbjct 105172 TTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAG 105230 Query 42071 GTTACAAAAGGTGTTTGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCT 42130 ||||| || || ||||| || || | || || || || ||||| |||||| | | Sbjct 105231 GTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGAT 105290 Query 42131 TGGAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCG 42190 ||||| |||||||| |||||||| |||| | |||||| |||||| | Sbjct 105291 TGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCA 105350 Query 42191 ATTTGCCATTTTTCTGCATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAA 42250 || ||| || || | | ||||||| ||||| || | |||||||||| | Sbjct 105351 ATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCA 105410 Query 42251 AGTACTTTATCTACATTCG--CAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTG 42308 || | || ||| || || | || || || || || |||| ||| || || | Sbjct 105411 AGGATTTCATC--AATGCGGTTGATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAG 105468 Query 42309 CAGTAATTTGTGCCATAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTG 42368 | ||||||| || | | ||| || ||| ||||||||||||| || || | | Sbjct 105469 CGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGG 105528 Query 42369 CATTACCAAGCTTAAATCCATT 42390 ||||||| | ||||| ||||| Sbjct 105529 CATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60306 ATTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60365 |||||||| | || || ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 60366 AGTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATA 60414 ||||||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 70364 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 70423 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 70424 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70475 || | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530331044043360