Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031121.1 Length=25908 Score E Sequences producing significant alignments: (Bits) Value seq1089 129 1e-25 >seq1089 Length=16580 Score = 129 bits (142), Expect = 1e-25 Identities = 211/294 (72%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 15974 GGTGTGTTCTTGATTAAAAAACAGATCAAACCAGAATATCAAAAGAAATTAGAAGATTTC 16033 || ||||| || | || | || ||||||||||||||||| || ||| || ||||| Sbjct 4051 GGAGTGTTTTTACTAAAGTATCAAATCAAACCAGAATATCAGAACGTTTTACAAAATTTC 4110 Query 16034 TTTAAGTTATATGGATATAAAAAGAATGAAGTAAAAGTTCCTAATCTTCATACTAGACAA 16093 ||| | ||||| || ||| ||| |||||||||||| || | || ||||||||| Sbjct 4111 TTTTCCATGTATGGTTACAAATCAAATCTAGTAAAAGTTCCAAACTTACACACTAGACAA 4170 Query 16094 AACTGGAATTATGTGCAAACA-AAAGATGTAAACATTATTGGAGATTTTAAT-ACAGAAG 16151 || ||||| |||||||||||| || |||| ||||||| || || ||| | | | Sbjct 4171 AATTGGAACTATGTGCAAACAGAAGGATG-CAACATTACAGG----TTCAATGGCGGTTG 4225 Query 16152 ATTTAAATGAATTGAAA---GCA--ATCTTTGATGGTGGTATTACATTATGGCATACAAA 16206 | | | ||| ||||||| | | |||||| || | || || ||||||||||||||| | Sbjct 4226 A-TAATATG-ATTGAAATACGAAACATCTTTAATAGCGGAATAACATTATGGCATACAGA 4283 Query 16207 TGATGTAGGAAATTATACTTTAAGTAATGAGGTGATATAGATATGTTTAATAAT 16260 |||| | || |||||| | || |||| ||| |||||| |||| || ||| Sbjct 4284 TGATATTGGTAATTATGCCTTGTCGAATGGAGTGTTATAGA-ATGTCAAAAAAT 4336 Score = 89.7 bits (98), Expect = 9e-14 Identities = 201/296 (68%), Gaps = 7/296 (2%) Strand=Plus/Plus Query 16606 AAAAACAGGCATGGTCTTGTAATATGGAATAATGATTTGCATATTCCTACAA-TGGATAG 16664 ||||||| | ||| || ||||||| || ||||| |||| | |||||||| |||| Sbjct 4658 AAAAACATG---GGTGTTTTAATATGCAACAATGACTTGCGTTATCCTACAACTGGAACA 4714 Query 16665 TGTCATTATGTTTGCA-AAGAAGTTGGCGAATGCTTCAGAGATTATTGATATCAACTTAA 16723 | || ||||||||| ||||| ||| ||| | || |||| |||| | | Sbjct 4715 ATTGAT-ATGTTTGCAGAAGAACTTGCAGAAAT-TAAAGCCATTACAAGAGTCAATCTGA 4772 Query 16724 ATGCTCAGAAGACACCTGTATTAGTTACAGCAGAAGATTCTAATAAATTTTCATTGATGC 16783 | || || || ||||| || || || | | || |||| |||||| |||| || | Sbjct 4773 ACGCACAAAAAACACCAGTTTTGATTGCTGTCGATGATTTAAATAAACTTTCTATGTTAA 4832 Query 16784 AAATTTATAATCAATATGAAGGAAATGCTCCTGTTATTGTTGCTAATAAACACTTTGACC 16843 | ||||| || ||||||||||| |||||||||| ||| ||| | ||| | | | | Sbjct 4833 ACATTTACAACCAATATGAAGGCAATGCTCCTGCTATCGTTACATCAAAAGAAGCTAATC 4892 Query 16844 CGAAAACAATTACTGTTCATAAAACAGATGCTCCATATGTTGTTGATAAGATTAAT 16899 || | |||| || ||||||||||| || || |||||||| || || ||| Sbjct 4893 TTGAATCTATTAAAGTATTCAAAACAGATGCACCGTACGTTGTTGACAAAATCAAT 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82785560270149