Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq165 531 3e-146 seq1596 147 1e-30 seq87 91.5 1e-13 >seq165 Length=448888 Score = 531 bits (588), Expect = 3e-146 Identities = 909/1305 (70%), Gaps = 14/1305 (1%) Strand=Plus/Plus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 || ||||| ||||||||||| || |||| || ||||| | || || ||||| |||||| Sbjct 61805 CCCGCATAATTATCAAACCGCGACCATTGACCATTAAATGTCAGTCGAACCGTACCAATT 61864 Query 96755 GGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGG 96814 || ||||| |||||||| || | ||| | || |||| || |||| ||| |||| | Sbjct 61865 GGACCATTACGTTGCTTACCTAAAATAATTTCAGCAACCCCTTTCAATTCACTATTATCG 61924 Query 96815 TGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCT 96874 |||||||| || || ||||| | |||||| || ||||| || |||||||| || | ||| Sbjct 61925 TGATAAACCTCATCACGATAAATAAACATAATAAGGTCAGCATCCTGCTCGATAGAGCCT 61984 Query 96875 GATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATT 96933 ||||||||||| || || || || || ||||| || |||||||| || |||| ||| || Sbjct 61985 GATTCACGTAAGTCAGAGTTCACAGGGCGTTTATCTGCACGCTGCTCTAAGC-TTCGGTT 62043 Query 96934 AAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCG 96993 ||| |||||||| || || ||||| || | || || || ||||| || |||| |||||| Sbjct 62044 AAGCTGTGACAAAGCAACGACCGGAACATTCAACTCTTTTGCCAATGCTTTCAATGAGCG 62103 Query 96994 AGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTG 97053 ||||| || |||||||| | || |||||||| | |||| || | ||| | || Sbjct 62104 TGAAATTTCTGCAATTTCTAAAGTACGGTTATCAGATAAAGCCGGTACTCTCATCAACTG 62163 Query 97054 CAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCG 97113 || |||||| |||||||| | || |||||||||| || ||||| ||| || || || Sbjct 62164 CAAGTAGTCAATCATAATAAGACTTAAACCACCATGCTCACGATAAATACGTCGGGCACG 62223 Query 97114 GGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTC 97173 |||||| | ||||| || |||| | |||||||||||| | || || | || || Sbjct 62224 GGAACGCACTTCTGTAGGGGTCAACCCCGAAGAGTCATCAATATACATGTTACGTTTTTC 62283 Query 97174 CAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGT 97233 | || || ||||| | || |||| |||||||||||||| || | | || || || Sbjct 62284 AGAAAGGATCCCCATGGTGCTCGAAATACGCGCCCAATCCTCATCATCTAACTGACCAGT 62343 Query 97234 TCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTG 97293 ||||||||||| || || || |||| | ||| || | |||||||| | |||| Sbjct 62344 ACGAATACGAGTTTGGTCTACACGTGATAAAGACGCTAACATACGCATCATGATTTGGTT 62403 Query 97294 GCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTC 97353 | |||||||| | || |||| | ||||| || || | | || || ||||| Sbjct 62404 ACCGGGCATCTCCAAACTGAAAATAAGCACGGGTTTTTCTTCTGTCATGGCCGCGTTTTC 62463 Query 97354 -GACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGA 97412 || || ||||||||||| ||||| |||||||| ||||| || || || ||||| || | Sbjct 62464 ACACAAG-TTCATCGCAAAAGTGGTTTTCCCCATTGATGGACGAGCCGCAACAATAATTA 62522 Query 97413 GATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGTC 97472 || || || || || || || ||||||| |||||| | | || || | | Sbjct 62523 AGTCCGAACCTTGCAGGCCAGCGGTTTTCTTATCGAGATCTTGATAACCAGTCGATACCC 62582 Query 97473 CCGTTACACCATCATGCGGTCGCTGAAACAACTCTTC--TATGCGAGATACCGTTGCATC 97530 | || || |||||||| ||| | || | | || ||| | | |||| ||| | | Sbjct 62583 CTGTCACCCCATCATGAGGTTGTTGGTAGAGCTTTTCGATTTTTTCGATA--GTTTCGGC 62640 Query 97531 GAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCT-TTTG-TCGTTTTTCAGCTATT 97588 | |||| | ||||||||||| | || | || | |||| || ||| || ||| Sbjct 62641 CAAAATGGCTTCAATATCTTTTGGGC--CTTCGTCTTTATTTGCGCGCGATTCGGCAATT 62698 Query 97589 TCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCA 97648 | || || ||| || | ||| |||| || | || | || || | | | || Sbjct 62699 TGGAAGACTTTTGTTTCCGCAAAATCGAGCAGATCCTCACTACTACGCCCCTGCGGATCA 62758 Query 97649 TATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCA 97708 ||||| || || || |||||||| || || || ||||| ||||| ||||| || |||||| Sbjct 62759 TATCCTGCATCGGCAATTTCATTGGCAACAGAGATCATATCACGCACAACTGCACGTTCA 62818 Query 97709 CGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCC 97768 || |||||||| |||||||| || |||||||| || ||||| || || || | || Sbjct 62819 CGGACGATATCTGCATAAGCGTTGATGTTTGCCGCACTTGGCGTATTTTTAGATAATTCA 62878 Query 97769 GCAAGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCA 97828 || || || ||||| || || | | ||||||| ||| | ||||||||| | ||||| Sbjct 62879 GCGAGATAAGCAAACCCGCCAACACCATCTAATTCACCTTGCTGTTCAAGAGATTCAGAT 62938 Query 97829 AGTGTTATCAAATCAATCGGTTTGCCATGACTTAA-TAACCTCTCCATCTCACTGAAAAT 97887 | ||| |||||||| || |||||||| || || || ||| ||| ||| | | ||||| Sbjct 62939 AATGTGATCAAATCGATAGGTTTGCCTTG-CTCAAGTAAAGTCTGCATTTGAGCAAAAAT 62997 Query 97888 TTCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCA 97947 || || | | | |||||||||| || | ||| || | || |||||| Sbjct 62998 AGTGCGGTGTGGACGGCTATAAAAATCGGCATGGGTCACACGCTCAGAAACGGTATCCCA 63057 Query 97948 GCGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 ||| |||||| | ||| || || || | ||||| ||||| || Sbjct 63058 GCGTTCGTTATCCAACATCAACCCCCCCAATACAGACTGTTCCGC 63102 >seq1596 Length=248270 Score = 147 bits (162), Expect = 1e-30 Identities = 401/607 (66%), Gaps = 19/607 (3%) Strand=Plus/Minus Query 83404 CAGCCTTCAAAATCATATGGGCTGTACTGCCAGGTTATTTTTCCGCAATGCGGACAATTC 83463 ||||| ||| ||||||||||| ||| |||||| | ||||| ||||| || |||||| Sbjct 113865 CAGCCGTCATAATCATATGGGTTGTGTTGCCAGCTGATTTTCCCGCAGCAAGGGCAATTC 113806 Query 83464 CAACGCACCTTCCCGCTTCGCGACTTCTTTCTTCTGTTCTGCTCTTTCAACCAGTCAGGC 83523 || || || ||||| | ||| | | |||| || | ||| | ||| || || Sbjct 113805 CATCGTGTTTTACCGCTATTCC-CTT--TGCGTCTGCGTTGTTTTTTAAGCCACTCGGGA 113749 Query 83524 ATGACCAAACCTGCGCCCTGAACCATTGTTCTGCGGTTAAAGTTATTGATATT--GAACG 83581 | | ||| ||||| | || ||||||| | || |||||| | || | ||| | Sbjct 113748 ACGCGCAAGCCTGCACTTTGCACCATTGAGCGAGCATTGAAGTTA--GCTAATCGGAATG 113691 Query 83582 TCCGACGCTTTGCTGCATCAGCAATGGAAAATGGCAACCAAACTAT-TCCTGGTTCGTTT 83640 | || | || |||||||||||| || || | ||| || || | | ||||| Sbjct 113690 TGCGTCTTTTCCGTGCATCAGCAATATCGAACGGTAGCCAGACAATGTTATCCATCGTTA 113631 Query 83641 TTGTTGGCGACGCTAAAGATGGTCGCTT---TACTGAA--GTCATCTGTTGGCAATCCAC 83695 ||| | | || |||||| || |||| || || ||| |||| | Sbjct 113630 AATCTGGAGTGGTGAA------TCGCTTAGCTATTGAAAAGTTTGTTGATGGATATCCGC 113577 Query 83696 CGTGTTGAAGCCAGTAAACATCGTTGCCGTTCCAGCTACCTTTTTTGTAGGCCACATACG 83755 || | | ||||||||||||||| || | ||| |||||| || | || || Sbjct 113576 GGTCATTCAACCAGTAAACATCGTTACCATCCCAATCACCTTTCACATATCCAACGTAGT 113517 Query 83756 CAGTGCAATCTGACTCAATCAGGCTTTCTGTGGGGATGTACTGGCAATCAACGTGCCACA 83815 | |||| | ||||| | | |||| | || |||||||||||||||||||| | Sbjct 113516 AATTGCATTTACTTTCAATTACGGTTTCGTTTGGTATGTACTGGCAATCAACGTGATATT 113457 Query 83816 CAGCCATTGCATCCACGCTATCAGCGCAAACAGGCTGATCGATATCTCGTCCACAATTCC 83875 |||| | || ||||| |||| | | |||||||| || ||| || || | || Sbjct 113456 CAGCAAGTGATAGAACGCTTTCAGTGGATACAGGCTGGTCAATACTTCTCCCGTGCTCCC 113397 Query 83876 AGGCTTTTTGGGCTTCTTCCAGCGTGTAAACATGAGCGCGATCGATATCAGAACTGTAAC 83935 | || ||||| || |||||||| ||||| || ||||| ||||||||||| |||| Sbjct 113396 ACGCCTTTTGCGCCTCTTCCAGAGTGTATACGTGAGCCTTATCGATATCAGTGGCATAAC 113337 Query 83936 CATTGCCGTTATGGCAATGGAATGAGGCGTTATTACCCACAGTTTCACGCAAGCACATCA 83995 | ||||||| | |||||| ||||| ||||| | ||||| ||||| || ||| |||| Sbjct 113336 CTTTGCCGTCCTTGCAATGAAATGATGCGTTGCTCCCCACCGTTTCGCGGGTGCATATCA 113277 Query 83996 TGTAAAA 84002 ||||||| Sbjct 113276 TGTAAAA 113270 >seq87 Length=489008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 98311 AAATATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTC 98370 |||| ||||||||||| | ||||||||||| | |||| ||||||||||||| | |||| Sbjct 311564 AAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTC 311505 Query 98371 TAACC-ACTGAGCTAAAGGGCC 98391 ||||| |||||||||| ||||| Sbjct 311504 TAACCAACTGAGCTAAGGGGCC 311483 Score = 89.7 bits (98), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 62460 CTTCATTAAAATCAGTGGTT--TCACTGAGGAAGAACTATTAGGCCAGCCTCACAACATC 62517 ||| || || ||||||||| ||||| |||||| | | ||||| || || || Sbjct 359719 CTTTATCCAAGTCAGTGGTTATTCACTC--GAAGAATTGCTTTATCAGCCACATAAAATT 359662 Query 62518 GTAAGACACCCAGATATGCCGCCTGCTGCATTTGAGCATATGTGGAGTACATTAAAATCT 62577 | | ||||| |||||||| || || |||| ||||||||||||| | ||| Sbjct 359661 ATTCGTCACCCTGATATGCCAAAAGCCGCCTTTGCTGATATGTGGAGTACCCTCAAAAAC 359602 Query 62578 GGCCGCTCATGGATGGGGCTAGTAAAAAATCGCTGTAAAAATGGCGACCACTATTGGGTA 62637 |||| |||||| |||| | || |||||||| ||||||||||||| ||||| ||||| Sbjct 359601 GGCCAGCCATGGACGGGGATCGTCAAAAATCGGCGTAAAAATGGCGATCACTACTGGGTT 359542 Query 62638 AGTGC 62642 || || Sbjct 359541 AGAGC 359537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330892291755358