Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1304 105 2e-17 seq964 102 2e-16 >seq1304 Length=336898 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||| || || |||||||||||||| |||| || || | ||||| Sbjct 274187 GAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATC 274246 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| || |||||||| | | || || || | | ||| ||||| || || Sbjct 274247 TTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTC 274306 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| |||||| | || | | |||| ||| ||| ||||| | ||||| || Sbjct 274307 TTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGT 274366 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||||| |||||| Sbjct 274367 CTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq964 Length=291957 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| |||||||| || || ||||||| ||||| | || ||||| | Sbjct 215390 CAAG-TGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCA 215332 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||| || || || | || || || | | || || ||||| ||||||| Sbjct 215331 ATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGAA 215272 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | || ||| || || ||||| || || || |||| Sbjct 215271 TTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGC 215212 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||||||||||| |||||||| Sbjct 215211 CAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| || || |||||||||||||| | | || | |||||||| | Sbjct 216858 ATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCCAATTG 216799 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | || ||||| | | || |||||||| ||||| || || Sbjct 216798 TTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTT 216739 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | | | || ||| || ||||| | ||| || ||||| || || Sbjct 216738 AGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTTCCGGT 216679 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| |||||||||| |||||| Sbjct 216678 CAAAGTTTTCACGAAGATCTGCAT 216655 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || ||||| |||||||||||||| || | || || | |||||| Sbjct 217094 AGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCT 217035 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| | | ||||| || | | || |||||||| || Sbjct 217034 TCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCC 216975 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || |||| | | | || ||| || ||||| | ||| || ||| Sbjct 216974 TGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTT 216915 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | || || ||||||| ||||| Sbjct 216914 TTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| || || ||||| | || || | ||| ||||| | ||| || Sbjct 215608 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 215549 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | | || || || | | ||||||||| || ||||||||||| ||| Sbjct 215548 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTA 215489 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || ||| ||| ||||| | ||| || |||||||| || | ||| Sbjct 215488 ACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTC 215429 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 215428 TTAACAAAGATTTGCAT 215412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795476157423